Factsheet for PGSC0003DMT400082693

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	100.0	53.63
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	100.0	43.57
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	99.18	35.33
VIT_01s0026g00190.t01	Wine grape	cytosol	64.34	22.99
KRH69547	Soybean	cytosol, plastid	54.51	18.65
GSMUA_Achr3P06160_001	Banana	plastid	42.62	18.34
PGSC0003DMT400062931	Potato	cytosol	50.82	18.18
PGSC0003DMT400027542	Potato	cytosol	26.23	17.98
GSMUA_Achr9P14560_001	Banana	cytosol	42.62	17.78
PGSC0003DMT400030161	Potato	cytosol	25.82	17.6
Bra019924.1-P	Field mustard	mitochondrion	47.13	16.55
CDX93411	Canola	mitochondrion	47.13	16.48
CDY55050	Canola	cytosol	45.9	16.09
PGSC0003DMT400060674	Potato	plastid	29.51	15.96
PGSC0003DMT400034564	Potato	nucleus, plastid	29.92	15.94
AT1G10560.1	Thale cress	cytosol	45.49	15.93
AT1G60190.1	Thale cress	cytosol, plastid	43.85	15.6
CDY54132	Canola	cytosol	42.62	15.29
CDY24520	Canola	cytosol	41.8	15.13
Bra031521.1-P	Field mustard	cytosol	41.39	14.92
Os09t0378700-00	Rice	plasma membrane, plastid	40.98	14.04
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	39.34	13.93
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	39.34	13.89
TraesCS2B01G499300.1	Wheat	plasma membrane	38.93	13.79
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	38.52	13.41
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	38.52	13.41
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	38.11	13.27
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	37.3	13.11
Zm00001d020332_P001	Maize	cytosol	37.3	13.04
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	37.3	12.98
KXG35540	Sorghum	plasma membrane	37.3	12.71
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	36.89	12.61
PGSC0003DMT400019235	Potato	cytosol	31.97	12.5
PGSC0003DMT400016998	Potato	cytosol	21.72	11.8
PGSC0003DMT400078166	Potato	cytosol	30.74	11.35
PGSC0003DMT400001049	Potato	cytosol	30.74	11.3
Os08t0415600-00	Rice	cytosol	32.79	11.16
PGSC0003DMT400027406	Potato	cytosol	11.89	10.86
PGSC0003DMT400039084	Potato	cytosol	19.67	10.84
PGSC0003DMT400077205	Potato	cytosol	29.51	10.6
PGSC0003DMT400015349	Potato	cytosol	27.05	10.2
PGSC0003DMT400073254	Potato	cytosol	29.1	9.81
PGSC0003DMT400078473	Potato	cytosol	25.0	9.38
PGSC0003DMT400011486	Potato	cytosol	13.52	9.24
PGSC0003DMT400075612	Potato	cytosol	24.18	9.15
PGSC0003DMT400026700	Potato	cytosol	28.69	9.0
PGSC0003DMT400025648	Potato	cytosol	23.36	8.78
PGSC0003DMT400071349	Potato	plastid	22.95	8.09
PGSC0003DMT400046295	Potato	cytosol	27.05	8.04
CDY04344	Canola	cytosol	0.0	0.0
CDY04342	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400082693	EnsemblPlantsGene:PGSC0003DMG400032766	EntrezGene:107059435	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	PFscan:PS50176	PGSC:PGSC0003DMG400032766	RefSeq:XP_015161428.1	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI00029518C6	UniProt:M1D641	MapMan:35.1	:	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400032766]

Coordinates

chr00:+:43655051..43655981

Molecular Weight (calculated)

26542.7 Da

IEP (calculated)

8.604

GRAVY (calculated)

0.275

Length

244 amino acids

Sequence
(BLAST)

001: MATLLNLSKN SKCKSTIVGN GGLFLILDVL KGGLKMEARQ HAAGTLFYLT SVEEYRKMMG ENPEFIPSLL ELLRNGTDRG KKNALVTIFG LLMRPENHWR
101: VIAAGLVPLV VNLLKSFERE DLITDSLAVL TTLSERLDGA MAVLYAGALP IIVNVLSSCN SRASKEYCVS LLLALCINGG ADAVPVLVKN SSLMGPLYSL
201: LAEGNSKASK KASTLIRILH EYNEKTSSGL ITPVFIEDQF INVW

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.