CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082693	Potato	cytosol	18.65	54.51
VIT_01s0026g00190.t01	Wine grape	cytosol	52.03	54.32
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	41.37	52.68
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	47.97	49.93
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	30.72	48.13
KRH03317	Soybean	cytosol, plastid	43.9	46.3
CDY24520	Canola	cytosol	41.8	44.21
AT1G60190.1	Thale cress	cytosol, plastid	42.08	43.73
Bra031521.1-P	Field mustard	cytosol	41.51	43.72
Bra019924.1-P	Field mustard	mitochondrion	42.5	43.6
CDY55050	Canola	cytosol	42.5	43.53
CDY54132	Canola	cytosol	41.51	43.53
AT1G10560.1	Thale cress	cytosol	42.36	43.33
KRH54418	Soybean	cytosol, plastid	41.37	43.19
CDX93411	Canola	mitochondrion	42.22	43.12
CDY04344	Canola	cytosol	19.21	42.95
CDY04342	Canola	cytosol	19.5	41.74
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	39.55	40.81
TraesCS2B01G499300.1	Wheat	plasma membrane	38.85	40.2
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	38.43	39.77
GSMUA_Achr9P14560_001	Banana	cytosol	32.26	39.32
GSMUA_Achr3P06160_001	Banana	plastid	31.0	38.98
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	37.59	38.62
Zm00001d020332_P001	Maize	cytosol	37.45	38.25
KXG35540	Sorghum	plasma membrane	38.15	37.99
Os09t0378700-00	Rice	plasma membrane, plastid	37.87	37.92
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	37.87	37.82
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	37.03	37.66
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	36.89	37.52
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	36.61	37.23
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	36.33	36.95
Os08t0415600-00	Rice	cytosol	35.9	35.7
KRH04403	Soybean	mitochondrion	15.85	31.22
KRH17146	Soybean	cytosol	10.24	30.67
KRH11061	Soybean	mitochondrion, plastid	30.57	30.45
KRG91959	Soybean	cytosol	26.65	30.11
KRH34817	Soybean	cytosol	26.51	29.91
KRH21208	Soybean	mitochondrion	30.01	29.89
KRH65448	Soybean	plastid	20.34	29.71
KRH24807	Soybean	cytosol	27.49	29.61
KRH68828	Soybean	cytosol	17.81	29.53
KRH29807	Soybean	cytosol	27.35	29.5
KRH42917	Soybean	mitochondrion	29.31	29.23
KRH59027	Soybean	mitochondrion	28.89	28.81
KRG97080	Soybean	cytosol, nucleus	17.67	28.64
KRH15451	Soybean	cytosol	10.66	28.04
KRH73275	Soybean	cytosol	19.78	27.7
KRH46608	Soybean	cytosol	17.25	26.68
KRG99581	Soybean	cytosol	17.25	26.68
KRH76105	Soybean	cytosol, plastid	25.95	26.35
KRG89279	Soybean	cytosol	23.98	26.27
KRH50347	Soybean	nucleus	23.7	25.84
KRG99865	Soybean	cytosol	21.6	24.96
KRH00831	Soybean	cytosol	21.74	24.41
KRH40395	Soybean	cytosol	21.74	24.41
KRG92593	Soybean	cytosol	14.73	23.7
KRH05594	Soybean	cytosol	11.5	23.3
KRH52088	Soybean	cytosol	10.38	22.63
KRH01984	Soybean	cytosol	12.76	21.41
KRH51173	Soybean	cytosol	12.76	21.26
KRH36562	Soybean	plastid	13.6	21.18
KRH11541	Soybean	plastid	13.46	21.01
KRH33490	Soybean	cytosol	14.87	20.19
KRH72794	Soybean	plasma membrane	22.72	19.93
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.02	19.29
KRG98177	Soybean	cytosol	22.3	18.91
KRH30135	Soybean	cytosol	22.16	18.85
KRH67390	Soybean	cytosol, plastid	21.04	17.52
KRH32190	Soybean	cytosol	16.27	17.5

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100795816	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02000721	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_02G034200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	UniProt:I1JC18	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlants:KRH69547	ProteinID:KRH69547	ProteinID:KRH69547.1	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000294E03A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:3168260..3170814

Molecular Weight (calculated)

79529.5 Da

IEP (calculated)

8.185

GRAVY (calculated)

-0.097

Length

713 amino acids

Sequence
(BLAST)

001: MKTKQNIDSR IQNTKLQHVP FSMIRNTNRS DRRVLTSPVV HPCDNIALST LLPSLITLSN AISNFQHSSF PCNKRNARIA IRLTRLLQPF LHEIRDHHSG
101: LADPATLSLS ELHLTFQKLL FLLEDLTRKG AKLYMLMESD RVATQFRVIS RSVATALDVF PFGSVEISEE TKEHVLLLNE QARRARLEFE QEDKRVVVSV
201: VSGLTRFENR VPPGEGDLKW VLEYIGVKKW SECNKEVKFL EGEIGFECLK NEEKGKMVFL SSLMGFMSYC RCVVMEDVDC EESNKKINVR ESSVESEVSL
301: SLTFLNSDDF RCPISLELMS DPVTIETGHT YDRSSILKWF SSGNLMCPKT GKRLSSTEMV PNLVLRRLIQ QHCYTNGISI PFVDSSHRNR KITRTEEPGS
401: VAAEGAMRML ASFLNGMIEN GSGEEKNRGA FEIRLLSKTS IFSRSCLVEA GLAPLLLKLL SSSDSLTQEN AAAALLNLSK CAKSRSVMVE KWGLELIIDV
501: LRKGLKIEAS QHVAAVLFYL SAEYGNLIGE EPEAIPSLIR LIKDGSYRSK KNGLVAIFGL LKHPENHRRV LEGGAISSLV DILKGCEKED LITDSLAILA
601: TLAERSEGML AILHGEALHV AVEILSCSTS RVGKEHCVAL LLSLSLHGGE DVVAYLVKRT SLMGSLYSQL SEGTSRASKK ASALIRVLHD FYERRSSGFK
701: ASVIPQEQFI HVR

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.