Factsheet for Os09t0378700-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020332_P001	Maize	cytosol	74.72	76.22
KXG35540	Sorghum	plasma membrane	75.56	75.14
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	71.63	72.75
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	71.49	72.61
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	71.35	72.47
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	70.79	71.9
Os08t0415600-00	Rice	cytosol	59.55	59.14
GSMUA_Achr9P14560_001	Banana	cytosol	39.04	47.52
GSMUA_Achr3P06160_001	Banana	plastid	34.83	43.74
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	40.03	41.97
VIT_01s0026g00190.t01	Wine grape	cytosol	39.33	41.0
PGSC0003DMT400082693	Potato	cytosol	14.04	40.98
KRH03317	Soybean	cytosol, plastid	37.36	39.35
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	29.92	38.04
PGSC0003DMT400062931	Potato	cytosol	36.38	37.98
KRH54418	Soybean	cytosol, plastid	36.38	37.92
KRH69547	Soybean	cytosol, plastid	37.92	37.87
Solyc03g114160.1.1	Tomato	cytosol	36.24	37.83
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	35.53	36.93
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	23.46	36.7
CDY55050	Canola	cytosol	35.81	36.64
AT1G10560.1	Thale cress	cytosol	35.67	36.44
AT1G60190.1	Thale cress	cytosol, plastid	34.97	36.3
CDX93411	Canola	mitochondrion	35.25	35.96
CDY24520	Canola	cytosol	33.85	35.76
Bra019924.1-P	Field mustard	mitochondrion	34.83	35.68
Bra031521.1-P	Field mustard	cytosol	33.85	35.6
CDY54132	Canola	cytosol	33.57	35.15
CDY04344	Canola	cytosol	15.59	34.8
CDY04342	Canola	cytosol	15.59	33.33
Os01t0823900-01	Rice	plastid	26.83	28.09
Os12t0570000-01	Rice	cytosol	20.37	28.05
Os05t0476700-01	Rice	plastid	26.26	27.62
Os06t0102700-01	Rice	plasma membrane	22.33	26.32
Os02t0234300-01	Rice	cytosol	21.35	26.16
Os08t0481200-01	Rice	cytosol	22.89	25.39
Os02t0732200-01	Rice	cytosol	22.61	25.27
Os06t0726900-00	Rice	cytosol	13.48	25.26
Os02t0488600-01	Rice	cytosol, nucleus	14.61	24.59
Os07t0587500-01	Rice	cytosol	12.22	24.03
Os03t0275900-01	Rice	cytosol	24.44	23.97
Os07t0584900-01	Rice	plastid	14.75	22.48
Os04t0348400-01	Rice	cytosol	13.76	21.35
Os03t0435300-00	Rice	cytosol	11.8	21.0
Os08t0110500-01	Rice	plasma membrane	20.22	17.48
Os01t0884400-01	Rice	plasma membrane	20.22	17.18

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:4346922	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAD26073.1	ProteinID:BAD26307.1	ProteinID:BAF24963.2	ProteinID:BAT07830.1	ProteinID:EAZ44554.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os09g0378700	EnsemblPlants:Os09t0378700-00	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF229	UniProt:Q6H4P2
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00003B45FB	InterPro:Ubox_domain
RefSeq:XP_015610856.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

plant U-box-containing protein 6, U-box protein 6Similar to ubiquitin-protein ligase. (Os09t0378700-00)

Coordinates

chr9:+:12746529..12748883

Molecular Weight (calculated)

74389.7 Da

IEP (calculated)

8.258

GRAVY (calculated)

0.179

Length

712 amino acids

Sequence
(BLAST)

001: MSSPPPPPPS KPKRRRLLSL PAVYPCEDIA PAPLLASLLS LAADVASRRA ADVDAFPVLR CGVRKAVRLA GILLAFLEEV QDAAAAAALP SSAVLGLTEL
101: HVAMQKLRFL LADCARRGAR LWVLVNAGMV ASELRLVLGS VAAAMDALPR SVAEASVEAG ELARVVSEQA WRAAVRPDGA DERAARSVRS ILDQFKDGVA
201: PDADDVRRVL RRVRVGSWSD CSEEIAFLES EICARLDAGD ENSNDVLVMN SLMTFLVYCR VVLFDHIDAS KSQPAAAAAP APARCPEWIR PEALQCPITL
301: DLMTDPVTVS TGQTYDRASI TRWMKAGCRT CPVTGERLST ADLVPNTVLR GIIERMLLIN GVTLPELSAA GGGGHRHGAV ANTAVPFGPA AAGAARLAVA
401: HIVAQLSRGS TEERRKATSE ARKLSKHSVF YRACLVDANA VPWLLCLLSS TDAAVQDNAV ASLLNLSKHP AGRTAIVEVG GVGLVVDVIN VGAKAEAQHN
501: AAAVLFYLSS NSPDSAEEIG RIPEAIPTLV QLIRDGAYRG RKNAMVSLYG LLQSAANHGR AIAAGAVSAL AALLLSADRD DLAGDSVALL ARIAEQPSGA
601: AAVLSQPGLV ARLAEALAAS SASSSRSARD HSVSLLASLC RHGGAKVVAV LGRMPGLMAS LYSLVADGGS PQTSKKARAL LNEIHRHYEV APPPPASSAS
701: SDAGGDRVVR VL

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.