Factsheet for Os01t0884400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17146	Soybean	cytosol	20.41	71.85
GSMUA_Achr9P12570_001	Banana	cytosol	24.94	69.67
EES01872	Sorghum	cytosol	61.34	63.85
GSMUA_Achr4P01530_001	Banana	plasma membrane	45.11	61.87
Zm00001d042608_P002	Maize	cytosol	60.38	54.7
Os08t0110500-01	Rice	plasma membrane	47.61	48.42
CDX76873	Canola	cytosol, plastid	42.36	47.52
VIT_07s0129g00590.t01	Wine grape	cytosol	47.02	46.46
Solyc01g014230.2.1	Tomato	cytosol	44.75	46.24
PGSC0003DMT400046295	Potato	cytosol	44.87	45.8
Solyc12g100000.1.1	Tomato	cytosol, plastid	44.75	45.79
CDY18649	Canola	cytosol, plastid	37.95	44.66
AT2G23140.1	Thale cress	cytosol	44.15	44.63
KRH72794	Soybean	plasma membrane	43.2	44.53
KRG98177	Soybean	cytosol	44.63	44.47
AT5G67340.1	Thale cress	cytosol	37.47	44.41
KRH30135	Soybean	cytosol	44.39	44.39
CDX81323	Canola	cytosol, plastid	38.19	44.26
Bra037117.1-P	Field mustard	cytosol, plastid	38.42	43.87
Os07t0587500-01	Rice	cytosol	17.54	40.61
CDY57440	Canola	cytosol	30.91	39.3
CDY12838	Canola	cytosol	32.7	39.2
Bra012155.1-P	Field mustard	cytosol	30.79	39.15
Bra032180.1-P	Field mustard	cytosol	27.09	38.87
CDY38931	Canola	cytosol	27.92	38.05
PGSC0003DMT400027406	Potato	cytosol	12.05	37.83
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	42.48	34.46
Os06t0102700-01	Rice	plasma membrane	24.82	34.44
Os12t0570000-01	Rice	cytosol	21.24	34.43
Os07t0584900-01	Rice	plastid	18.97	34.05
Os02t0488600-01	Rice	cytosol, nucleus	16.83	33.33
Os06t0726900-00	Rice	cytosol	15.04	33.16
Os03t0435300-00	Rice	cytosol	14.92	31.25
Os04t0348400-01	Rice	cytosol	16.47	30.07
Os08t0481200-01	Rice	cytosol	22.79	29.75
Os02t0732200-01	Rice	cytosol	22.32	29.36
Os03t0275900-01	Rice	cytosol	25.18	29.06
Os02t0234300-01	Rice	cytosol	17.66	25.47
Os05t0476700-01	Rice	plastid	19.33	23.93
Os01t0823900-01	Rice	plastid	18.38	22.65
Os09t0378700-00	Rice	plasma membrane, plastid	17.18	20.22
Os08t0415600-00	Rice	cytosol	16.11	18.83

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0P0VBB5	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAS75588.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os01g0884400
EnsemblPlants:Os01t0884400-01	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0000DD8E3C
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

plant U-box-containing protein 16, U-box protein 16Armadillo domain containing protein. (Os01t0884400-01)

Coordinates

chr1:+:38409242..38413057

Molecular Weight (calculated)

91649.7 Da

IEP (calculated)

5.131

GRAVY (calculated)

-0.258

Length

838 amino acids

Sequence
(BLAST)

001: SSSPPPATKR SETPPPRASH HEHLDTGVRI LLLPPPLEAS EVMDSVSLSL LDSISNFRVL SSSNASKTEL VKKYCQTMDG ILDHLEVALN RAFPQITPDG
101: ELSKVLEELG ATINEATELV GGWNQMMSKI YFVIQADSII AKMQIYVFEL CQIVNSLMQI ESMHLEDLEH DSCGKISDVI REASRALAGE VMPNSEEFGK
201: IQTTLSLSTN QELLMEYVAL VKVKTKGNHE DNKEMDDIND IVELVNHMLD KHVEEKQTRS INGVTIPADF CCPLSLELMS DPVIVASGQT YEHVFIRKWF
301: DLGYNICPKT RQILGHTKLI PNFTVKQLIE NWCEVHGIML PDPVKLLSLC FPVSLNITDG SASADKSGSP EHCQLVAALH PKAQCASDDS HHYNLIHENS
401: DSDDRVSSFG DTDDSEPDSL RLSTETTAAN KSLLDEKTDR SDGLKQLRDN GFQVSDEEQY LERNGKSHIS SHHQLEVDGE NVRVQASSDI NASEVMQDDP
501: VTTCSKVSDN PPRLGGVRSR NQPNWWRQSN KTIPRIGLSS STDSKPDFSG NDAKVRNLIE ELKSDSAEVQ RSATGELRIL SRHSLENRIA IANCGAIPFL
601: VSLLHSTDPS TQENAVTILL NLSLDDNNKI AIASAEAIEP LIFVLQVGNP EAKANSAATL FSLSVIEENK IKIGRSGAIE PLVDLLGEGT PQGKKDAATA
701: LFNLSIFHEH KTRIVQAGAV NHLVELMDPA AGMVDKAVAV LANLATVHDG RNAIAQAGGI RVLVEVVELG SARSKENAAA ALLQLCTNSN RFCTLVLQEG
801: VVPPLVALSQ SGTARAREKA QVLLSYFRNQ RHVRVGRG

Best Arabidopsis Sequence Match ( AT2G23140.4 )
(BLAST)

001: MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD
101: TIVDTFQFLM SSKNHLPDEL SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE AVALERQKEM AEQSENNAEV
201: EFLDQLIVIV NRMHERLLLI KQTQTSSVAI LADFFCPLSL EVMTDPVIVS SGQTYEKAFI KRWIDLGLKV CPKTRQTLTH TTLIPNYTVK ALIANWCETN
301: DVKLPDPNKS TSLNELSPLL SCTDSIPSTG ADVSARKVSN KSHDWDASSS ETGKPSFSSR ATEREGASPS RPASALGASS PGISGNGYGL DARRGSLNDF
401: EDRSNDSREL RTDAPGRSSV SSTTRGSVEN GQTSENHHHR SPSATSTVSN EEFPRADANE NSEESAHATP YSSDASGEIR SGPLAATTSA ATRRDLSDFS
501: PKFMDRRTRG QFWRRPSERL GSRIVSAPSN ETRRDLSEVE TQVKKLVEEL KSSSLDTQRQ ATAELRLLAK HNMDNRIVIG NSGAIVLLVE LLYSTDSATQ
601: ENAVTALLNL SINDNNKKAI ADAGAIEPLI HVLENGSSEA KENSAATLFS LSVIEENKIK IGQSGAIGPL VDLLGNGTPR GKKDAATALF NLSIHQENKA
701: MIVQSGAVRY LIDLMDPAAG MVDKAVAVLA NLATIPEGRN AIGQEGGIPL LVEVVELGSA RGKENAAAAL LQLSTNSGRF CNMVLQEGAV PPLVALSQSG
801: TPRAREKAQA LLSYFRNQRH GNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.