Factsheet for PGSC0003DMT400046295

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g100000.1.1	Tomato	cytosol, plastid	93.67	93.89
PGSC0003DMT400027406	Potato	cytosol	27.04	83.15
KRH17146	Soybean	cytosol	22.17	76.47
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	23.51	75.98
GSMUA_Achr9P12570_001	Banana	cytosol	25.94	71.0
GSMUA_Achr4P01530_001	Banana	plasma membrane	47.38	63.67
VIT_07s0129g00590.t01	Wine grape	cytosol	65.41	63.33
KRH30135	Soybean	cytosol	61.14	59.9
TraesCS3A01G390200.1	Wheat	cytosol	31.79	59.45
TraesCS3B01G422200.1	Wheat	cytosol	31.91	59.28
KRG98177	Soybean	cytosol	60.54	59.1
HORVU3Hr1G081380.1	Barley	cytosol	31.67	58.82
TraesCS3D01G382500.1	Wheat	cytosol	31.55	58.6
CDX76873	Canola	cytosol, plastid	52.38	57.56
AT2G23140.1	Thale cress	cytosol	57.25	56.69
KRH72794	Soybean	plasma membrane	55.91	56.46
CDX81323	Canola	cytosol, plastid	46.65	52.97
CDY18649	Canola	cytosol, plastid	45.92	52.95
Os08t0110500-01	Rice	plasma membrane	52.62	52.43
AT5G67340.1	Thale cress	cytosol	44.95	52.19
Bra037117.1-P	Field mustard	cytosol, plastid	46.65	52.18
TraesCS3B01G591000.1	Wheat	cytosol	51.52	50.9
TraesCS3D01G527900.1	Wheat	cytosol	51.52	50.9
TraesCS3A01G521300.1	Wheat	cytosol	51.28	50.66
HORVU3Hr1G113910.3	Barley	cytosol	51.28	50.24
Zm00001d035040_P007	Maize	mitochondrion	52.62	49.54
PGSC0003DMT400030161	Potato	cytosol	21.07	48.32
Bra012155.1-P	Field mustard	cytosol	38.49	47.95
CDY57440	Canola	cytosol	38.49	47.95
Bra032180.1-P	Field mustard	cytosol	33.86	47.6
CDY12838	Canola	cytosol	40.32	47.35
Zm00001d049708_P007	Maize	cytosol	50.18	46.71
PGSC0003DMT400027542	Potato	cytosol	19.98	46.07
CDY38931	Canola	cytosol	34.47	46.02
EES01872	Sorghum	cytosol	44.7	45.59
Os01t0884400-01	Rice	plasma membrane	45.8	44.87
TraesCS3B01G443500.1	Wheat	cytosol	28.14	43.67
TraesCS3A01G410100.1	Wheat	cytosol	28.01	43.48
EES14396	Sorghum	cytosol	53.11	43.3
PGSC0003DMT400026700	Potato	cytosol	39.83	42.03
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	52.38	41.63
TraesCS3A01G410000.1	Wheat	cytosol	31.18	40.38
Zm00001d042608_P002	Maize	cytosol	44.7	39.68
PGSC0003DMT400019235	Potato	cytosol	28.75	37.82
PGSC0003DMT400078166	Potato	cytosol	28.5	35.4
PGSC0003DMT400001049	Potato	cytosol	28.62	35.39
PGSC0003DMT400060674	Potato	plastid	19.24	35.03
PGSC0003DMT400034564	Potato	nucleus, plastid	19.49	34.93
PGSC0003DMT400016998	Potato	cytosol	18.39	33.63
PGSC0003DMT400015349	Potato	cytosol	26.19	33.23
PGSC0003DMT400078473	Potato	cytosol	25.09	31.69
PGSC0003DMT400011486	Potato	cytosol	13.64	31.37
PGSC0003DMT400025648	Potato	cytosol	23.87	30.2
PGSC0003DMT400077205	Potato	cytosol	24.97	30.19
PGSC0003DMT400075612	Potato	cytosol	23.26	29.61
PGSC0003DMT400039084	Potato	cytosol	15.59	28.89
PGSC0003DMT400082693	Potato	cytosol	8.04	27.05
PGSC0003DMT400073254	Potato	cytosol	23.26	26.38
PGSC0003DMT400071349	Potato	plastid	21.8	25.87
PGSC0003DMT400062931	Potato	cytosol	20.34	24.49
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	16.69	24.46
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	12.42	22.42

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102601332	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M1BIX2	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400017970	PGSC:PGSC0003DMG400017970	EnsemblPlants:PGSC0003DMT400046295
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002960FFD	InterPro:Ubox_domain	RefSeq:XP_006341792.1	RefSeq:XP_015161768.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Armadillo/beta-catenin repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017970]

Coordinates

chr5:+:10953441..10958557

Molecular Weight (calculated)

89693.7 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.153

Length

821 amino acids

Sequence
(BLAST)

001: MEISLLKVLL SKISQFFHLS SSESITDSLV QRYYCKAEDL LKILKPILEA IVDVEAASSE MLQKAFVRLA QFVDELRELC ETWQTLGSNV YFVLQAEPLI
101: VQIRTCSLEI LELLKTSHQC LPTDTTLTSL EHCILKIKYV DYELMSMTIT KSIKAQMEGL GANSGSFAKL ADCLRLKSNQ ELLIELVALE KLKENAEQAE
201: KTEEVEYIEQ IIALVSHMHD CFITMKQSQT CTPVPIPPDF CCPLSLELMT DPVIVASGQT YERAYIRKWI DLGLTVCPKT RQMLGHTTLI PNYTVKALIA
301: NWCESNNVKL PDPTKSLSLN QPSSFLAHAD SGMPRDTQGF PLPRGNHSLS PDSARSLNSP QKRLISSSMT QREGSSPSHP HSSLDDSLPG VASNMLALDV
401: ERISIKSSEE RMAHSGEINS HRHCMLAANE YSLVGHNRTS SAPSTLSNSN FSPTIPGDGN EVFSRSAAAA TDASGDVSES QPAAPLSVLQ REPEFPSMLE
501: TRVRNQSIWG RPSERFPRIV SSATVERRAD LLELEEQVRK LVQDLSSNSI DVQRDATAEL RLLAKHNMDN RVVMANCGSI NLLVNLLHSE DMKVQENAVT
601: TLLNLSINDN NKCSIANADA IEPLIHVLRT GSGEAKENSA ATLFSLSVIE DNKMKIGRSG AIKPLVDLLG NGSPRGKKDA ATALFNLSIL HENKGRIVQA
701: GAVKFLVELM DPAAGMVDKA VAVLSNLATI HEGRAAIGQE GGIPVLVEVV ELGSARGREN AAAALLQLCT NSSRFCNMVL QEGAVPPLVA LSQSGTPRAR
801: EKAQGLLSYF RNQRHGNAGR G

Best Arabidopsis Sequence Match ( AT2G23140.4 )
(BLAST)

001: MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD
101: TIVDTFQFLM SSKNHLPDEL SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE AVALERQKEM AEQSENNAEV
201: EFLDQLIVIV NRMHERLLLI KQTQTSSVAI LADFFCPLSL EVMTDPVIVS SGQTYEKAFI KRWIDLGLKV CPKTRQTLTH TTLIPNYTVK ALIANWCETN
301: DVKLPDPNKS TSLNELSPLL SCTDSIPSTG ADVSARKVSN KSHDWDASSS ETGKPSFSSR ATEREGASPS RPASALGASS PGISGNGYGL DARRGSLNDF
401: EDRSNDSREL RTDAPGRSSV SSTTRGSVEN GQTSENHHHR SPSATSTVSN EEFPRADANE NSEESAHATP YSSDASGEIR SGPLAATTSA ATRRDLSDFS
501: PKFMDRRTRG QFWRRPSERL GSRIVSAPSN ETRRDLSEVE TQVKKLVEEL KSSSLDTQRQ ATAELRLLAK HNMDNRIVIG NSGAIVLLVE LLYSTDSATQ
601: ENAVTALLNL SINDNNKKAI ADAGAIEPLI HVLENGSSEA KENSAATLFS LSVIEENKIK IGQSGAIGPL VDLLGNGTPR GKKDAATALF NLSIHQENKA
701: MIVQSGAVRY LIDLMDPAAG MVDKAVAVLA NLATIPEGRN AIGQEGGIPL LVEVVELGSA RGKENAAAAL LQLSTNSGRF CNMVLQEGAV PPLVALSQSG
801: TPRAREKAQA LLSYFRNQRH GNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.