Factsheet for PGSC0003DMT400078166

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076040.2.1	Tomato	cytosol	96.67	96.67
PGSC0003DMT400001049	Potato	cytosol	78.37	78.01
KRH29807	Soybean	cytosol	71.41	71.41
KRH24807	Soybean	cytosol	71.41	71.3
VIT_06s0004g04530.t01	Wine grape	cytosol	73.53	71.26
AT3G46510.1	Thale cress	cytosol	66.72	66.82
CDX68380	Canola	cytosol	53.4	66.35
CDX68379	Canola	cytosol	65.81	66.11
CDX86080	Canola	cytosol	65.51	66.01
Bra033820.1-P	Field mustard	cytosol	65.66	65.96
Bra018212.1-P	Field mustard	cytosol	64.9	65.9
CDX99112	Canola	cytosol	65.2	65.8
AT2G28830.1	Thale cress	endoplasmic reticulum	54.61	62.03
CDY31736	Canola	cytosol	58.4	60.12
CDX77213	Canola	cytosol	58.09	59.72
Bra035665.1-P	Field mustard	cytosol	58.7	59.51
Os12t0570000-01	Rice	cytosol	46.14	58.99
GSMUA_Achr10P...	Banana	cytosol	54.16	57.19
Zm00001d030732_P001	Maize	cytosol	56.13	55.79
GSMUA_Achr5P28670_001	Banana	cytosol	47.81	55.44
PGSC0003DMT400019235	Potato	cytosol	52.19	55.29
TraesCS4A01G097700.1	Wheat	cytosol	59.61	55.1
OQU79384	Sorghum	cytosol	55.37	54.95
HORVU5Hr1G021270.1	Barley	cytosol	56.43	54.69
TraesCS5A01G078400.1	Wheat	cytosol	56.43	54.53
Zm00001d041548_P002	Maize	cytosol	55.37	54.46
TraesCS5B01G087500.1	Wheat	cytosol	55.98	54.25
TraesCS5D01G093700.1	Wheat	cytosol	56.13	54.24
HORVU5Hr1G021280.1	Barley	cytosol	56.43	54.22
GSMUA_Achr6P34170_001	Banana	cytosol	54.16	53.92
Zm00001d028623_P001	Maize	cytosol	59.15	53.86
GSMUA_Achr5P07140_001	Banana	cytosol	50.68	53.34
Os03t0275900-01	Rice	cytosol	58.09	52.89
OQU92820	Sorghum	cytosol	58.7	51.8
TraesCS4B01G206900.1	Wheat	plastid	59.46	51.31
HORVU4Hr1G059610.2	Barley	cytosol	59.46	50.91
TraesCS4D01G207700.2	Wheat	plastid	59.3	50.45
GSMUA_Achr10P...	Banana	cytosol	56.43	43.17
PGSC0003DMT400015349	Potato	cytosol	41.6	42.5
PGSC0003DMT400025648	Potato	cytosol	40.85	41.6
PGSC0003DMT400078473	Potato	cytosol	40.39	41.08
PGSC0003DMT400075612	Potato	cytosol	39.18	40.16
PGSC0003DMT400016998	Potato	cytosol	26.32	38.75
PGSC0003DMT400077205	Potato	cytosol	37.52	36.52
PGSC0003DMT400027542	Potato	cytosol	19.52	36.24
PGSC0003DMT400030161	Potato	cytosol	19.52	36.03
PGSC0003DMT400011486	Potato	cytosol	17.55	32.49
PGSC0003DMT400060674	Potato	plastid	21.03	30.82
PGSC0003DMT400082693	Potato	cytosol	11.35	30.74
PGSC0003DMT400039084	Potato	cytosol	20.42	30.47
PGSC0003DMT400034564	Potato	nucleus, plastid	21.03	30.35
PGSC0003DMT400073254	Potato	cytosol	33.13	30.25
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	25.11	29.64
PGSC0003DMT400071349	Potato	plastid	30.41	29.05
PGSC0003DMT400026700	Potato	cytosol	33.89	28.79
PGSC0003DMT400046295	Potato	cytosol	35.4	28.5
PGSC0003DMT400062931	Potato	cytosol	28.9	28.01
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	18.91	27.47
PGSC0003DMT400027406	Potato	cytosol	11.04	27.34

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102593028	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M1CZI6	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400030407	PGSC:PGSC0003DMG400030407	EnsemblPlants:PGSC0003DMT400078166
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002961C49	InterPro:Ubox_domain	RefSeq:XP_006350762.1	InterPro:Znf_RING/FYVE/PHD

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030407]

Coordinates

chr6:-:56550311..56555870

Molecular Weight (calculated)

72297.1 Da

IEP (calculated)

5.481

GRAVY (calculated)

-0.206

Length

661 amino acids

Sequence
(BLAST)

001: MEEERGVLVQ KLIEVVNEIA AISDFRTWVK KEYCNLARRL KLLIPMFEEI RDIKEPLPEN SMIALVSLKE ALESTKELLK FGSEGSKIYL VLEREQIMNK
101: FHQVTTQLEQ ALGGVHYEEL DISDEVKEQV ELVLSQFQRA KGRVDTPDAE LREDLLSLYR KSNDPAIDPA VLRKLVKKLQ LTGLYDLTQE SCALHDMVTA
201: TGEDPEERIE KMSLVLRKIK GFVLTETPEI DSSSREKSST CSGQASIEAT HKAPVIPDDF RCPISLELMK DPVIVSSGQT YERSSIEKWL EAGHSTCPKT
301: QQVLTSNVVT PNYVLRSLIA QWCEMNGVES PKRPGSSPNK STSACTPAEH STIENLLRKL TSGSPEDRLS ATGEIRLLAK RNADNRVAIA EAGAIPLLVD
401: LLSTPDSRIQ EHAVTALLNL SICEDNKRSI VTSGAVPGIV HVLKKGSMEA RENAAAALFS LSVIDENKVI IGTFGAIPPL VTLLSDGTQR GKKDAATALF
501: NLCIYQGNKG KAVRAGVVVT LMGLLMEPQG GMIDEALAIL AILSSHPEGK TTIGAAGAVP VLVNVITNGS PRNKENAAAV LVHLCSGDQH HLVDVQELGI
601: MGPLVDLVQN GTERGRRKAT QLLERINRYA EQQKQAQTEP EAPIHNQLSQ SPPSSTDVLE C

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.