Factsheet for Zm00001d028623_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92820	Sorghum	cytosol	93.53	90.65
Os03t0275900-01	Rice	cytosol	79.34	79.34
TraesCS4A01G097700.1	Wheat	cytosol	77.82	79.02
TraesCS4B01G206900.1	Wheat	plastid	77.14	73.11
HORVU4Hr1G059610.2	Barley	cytosol	77.69	73.06
TraesCS4D01G207700.2	Wheat	plastid	77.69	72.59
GSMUA_Achr10P...	Banana	cytosol	55.23	64.06
VIT_06s0004g04530.t01	Wine grape	cytosol	57.99	61.73
KRH29807	Soybean	cytosol	55.92	61.42
KRH24807	Soybean	cytosol	55.79	61.18
Zm00001d030732_P001	Maize	cytosol	55.51	60.6
Solyc11g066040.1.1	Tomato	cytosol	55.23	60.48
GSMUA_Achr5P07140_001	Banana	cytosol	52.07	60.19
Zm00001d041548_P002	Maize	cytosol	55.65	60.12
PGSC0003DMT400001049	Potato	cytosol	54.96	60.09
PGSC0003DMT400078166	Potato	cytosol	53.86	59.15
GSMUA_Achr5P28670_001	Banana	cytosol	46.01	58.6
Solyc06g076040.2.1	Tomato	cytosol	53.17	58.4
AT2G28830.1	Thale cress	endoplasmic reticulum	46.69	58.25
AT3G46510.1	Thale cress	cytosol	51.65	56.82
Bra018212.1-P	Field mustard	cytosol	50.41	56.22
CDX86080	Canola	cytosol	50.69	56.1
CDX99112	Canola	cytosol	50.41	55.88
CDX68379	Canola	cytosol	50.41	55.62
CDX77213	Canola	cytosol	49.17	55.52
Bra033820.1-P	Field mustard	cytosol	50.28	55.47
CDY31736	Canola	cytosol	49.04	55.45
Bra035665.1-P	Field mustard	cytosol	49.72	55.37
CDX68380	Canola	cytosol	39.67	54.14
Zm00001d045632_P004	Maize	cytosol, mitochondrion	43.11	49.68
GSMUA_Achr10P...	Banana	cytosol	57.44	48.26
KRG99865	Soybean	cytosol	38.43	45.22
Zm00001d000381_P001	Maize	cytosol	35.95	40.91
Zm00001d031263_P001	Maize	cytosol	34.57	38.91
Zm00001d014845_P001	Maize	cytosol	34.16	38.69
Zm00001d016501_P001	Maize	cytosol	22.31	34.84
Zm00001d021978_P001	Maize	cytosol	17.36	34.81
Zm00001d006726_P001	Maize	cytosol	17.08	34.44
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	26.72	28.96
Zm00001d021951_P001	Maize	plastid	18.18	28.39
Zm00001d043043_P001	Maize	cytosol	25.76	28.21
Zm00001d006705_P001	Maize	plastid	17.49	27.37
Zm00001d012494_P001	Maize	cytosol	24.93	27.3
Zm00001d053544_P001	Maize	mitochondrion, plastid	26.45	27.23
Zm00001d016225_P001	Maize	plastid	26.58	26.47
Zm00001d020332_P001	Maize	cytosol	24.79	25.79
Zm00001d035040_P007	Maize	mitochondrion	30.72	25.57
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	23.69	24.78
Zm00001d049708_P007	Maize	cytosol	30.03	24.72
Zm00001d003967_P001	Maize	plastid	14.05	22.67
Zm00001d042608_P002	Maize	cytosol	28.1	22.05

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1D6JY56	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
InterPro:Neurochondrin	ProteinID:ONL96597.1	PFAM:PF00514	PFAM:PF04564	PFAM:PF05536	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF142	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0002207AC6	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d028623	EnsemblPlants:Zm00001d028623_P001	EnsemblPlants:Zm00001d028623_T001
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

U-box domain-containing protein 13

Coordinates

chr1:+:41163185..41168227

Molecular Weight (calculated)

78493.3 Da

IEP (calculated)

4.847

GRAVY (calculated)

-0.250

Length

726 amino acids

Sequence
(BLAST)

001: MDDESKSAPK SDVNTDAGAE AAAAAAPLPP SSSETAETEA RVEAADGESQ VVERLVELVS EIAAISDFRN SYRRQFCNLS RRIRLLVPML EEAKEAPTPL
101: TVASEAALRR LREALHAARD LLQLGSSGSK IFLVLDREKI MKTFQDVTAR LEQALAGISF DELNISDEVR EQVELVHTQF KRAKERSDSS DDDLFNELMS
201: LCNSSSSDSV DPDTLRRLSE KLQLVTIYDL NHESLTLHEM ASGGDPGAVV EKMSMLLKRI KDFVQTEDPE MGAQASTATI STKDNSACPV IPDDFRCPIS
301: LDLMKDPVIV ATGQTYERGY IEMWLEAGHD TCPKTQQKLA NKSLTPNYVL RSLITQWCEA NGIEPPKRPA QLRDAPLSCS AAEHSNVLEL LQKLSSQNLE
401: DQRGSAGMLR QLAKRSAENR ACIGDAGAIP ILVSLLSTTD VSTQEHVVTA LLNLSIYEEN KARIISSGAV PGIVHVLKRG SMEARENSAA TLFSLSIVDE
501: NKVTIGCSGA IPALVQLLSN GSQRGKKDAA TALFNLCIYQ GNKGKAVRAG LVPILLELLM ETESGMVDEA LAILAILSGH PEGKTAIGAA SAIPVLVGVI
601: RNGSPRNKEN AAAVMVHLCS GEQQQQHLAE AQEQGIVSLL EELAESGTDR GKRKAVQLLE RMNRFLKQQS QAEAEAEAMA QAHAQAQAQA QAQAQAQPQI
701: LVQAQAHADM QAERSLLPTS SDISDR

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.