Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035665.1-P | Field mustard | cytosol | 79.38 | 70.86 |
| CDX77213 | Canola | cytosol | 77.49 | 70.14 |
| CDY31736 | Canola | cytosol | 77.15 | 69.94 |
| Os12t0570000-01 | Rice | cytosol | 51.89 | 58.41 |
| Solyc11g066040.1.1 | Tomato | cytosol | 64.78 | 56.86 |
| PGSC0003DMT400001049 | Potato | cytosol | 64.78 | 56.78 |
| VIT_06s0004g04530.t01 | Wine grape | cytosol | 65.98 | 56.3 |
| AT3G46510.1 | Thale cress | cytosol | 63.4 | 55.91 |
| Solyc06g076040.2.1 | Tomato | cytosol | 62.2 | 54.77 |
| PGSC0003DMT400078166 | Potato | cytosol | 62.03 | 54.61 |
| Zm00001d030732_P001 | Maize | cytosol | 58.93 | 51.58 |
| HORVU5Hr1G021270.1 | Barley | cytosol | 59.45 | 50.73 |
| OQU79384 | Sorghum | cytosol | 57.9 | 50.6 |
| TraesCS5A01G078400.1 | Wheat | cytosol | 59.45 | 50.58 |
| Zm00001d041548_P002 | Maize | cytosol | 58.08 | 50.3 |
| TraesCS5B01G087500.1 | Wheat | cytosol | 58.93 | 50.29 |
| HORVU5Hr1G021280.1 | Barley | cytosol | 59.45 | 50.29 |
| TraesCS5D01G093700.1 | Wheat | cytosol | 58.76 | 50.0 |
| TraesCS4A01G097700.1 | Wheat | cytosol | 58.76 | 47.83 |
| GSMUA_Achr10P... | Banana | cytosol | 50.69 | 47.12 |
| Zm00001d028623_P001 | Maize | cytosol | 58.25 | 46.69 |
| Os03t0275900-01 | Rice | cytosol | 57.22 | 45.87 |
| OQU92820 | Sorghum | cytosol | 57.56 | 44.73 |
| AT3G54850.1 | Thale cress | cytosol | 48.45 | 44.62 |
| TraesCS4B01G206900.1 | Wheat | plastid | 58.59 | 44.52 |
| GSMUA_Achr6P34170_001 | Banana | cytosol | 50.52 | 44.28 |
| GSMUA_Achr5P28670_001 | Banana | cytosol | 43.3 | 44.21 |
| HORVU4Hr1G059610.2 | Barley | cytosol | 58.42 | 44.04 |
| GSMUA_Achr5P07140_001 | Banana | cytosol | 47.42 | 43.95 |
| TraesCS4D01G207700.2 | Wheat | plastid | 58.42 | 43.76 |
| AT1G71020.1 | Thale cress | cytosol | 41.07 | 38.06 |
| AT1G23030.1 | Thale cress | cytosol | 39.86 | 37.91 |
| GSMUA_Achr10P... | Banana | cytosol | 54.98 | 37.04 |
| AT5G42340.1 | Thale cress | cytosol | 38.32 | 33.79 |
| AT5G58680.1 | Thale cress | cytosol | 20.45 | 33.33 |
| AT3G01400.1 | Thale cress | cytosol | 20.27 | 33.24 |
| AT3G07360.1 | Thale cress | cytosol | 25.43 | 32.17 |
| AT5G18320.1 | Thale cress | cytosol | 23.71 | 30.13 |
| AT4G16490.1 | Thale cress | plastid | 21.65 | 26.69 |
| AT5G18340.1 | Thale cress | nucleus | 20.45 | 26.1 |
| AT5G67340.1 | Thale cress | cytosol | 31.27 | 25.74 |
| AT1G29340.1 | Thale cress | plastid | 31.79 | 25.38 |
| AT5G18330.1 | Thale cress | cytosol | 18.73 | 24.49 |
| AT3G54790.1 | Thale cress | cytosol | 31.79 | 24.34 |
| AT5G01830.1 | Thale cress | plastid | 28.01 | 24.18 |
| AT2G23140.1 | Thale cress | cytosol | 33.51 | 23.52 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 24.23 | 20.55 |
| AT1G10560.1 | Thale cress | cytosol | 23.54 | 19.66 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT2G28830 |
| EnsemblPlantsGene:AT2G28830 | RefSeq:AT2G28830 | TAIR:AT2G28830 | RefSeq:AT2G28830-TAIR-G | EnsemblPlants:AT2G28830.1 | TAIR:AT2G28830.1 |
| InterPro:Armadillo | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0004871 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007166 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000225 | InterPro:IPR003613 |
| InterPro:IPR011989 | InterPro:IPR013083 | PFAM:PF00514 | PFAM:PF04564 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50176 |
| PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF235 | Symbol:PUB12 | SMART:SM00185 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | SignalP:SignalP-noTM | UniParc:UPI0008487940 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PUB12PLANT U-BOX 12 [Source:TAIR;Acc:AT2G28830]
Coordinates
chr2:-:12368220..12370420
Molecular Weight (calculated)
64050.2 Da
IEP (calculated)
5.450
GRAVY (calculated)
-0.203
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRICFLSLA MLAKFTWCVL ERDQVMVKFQ KVTSLLEQAL SIIPYENLEI SDELKEQVEL VLVQLRRSLG KRGGDVYDDE LYKDVLSLYS GRGSVMESDM
101: VRRVAEKLQL MTITDLTQES LALLDMVSSS GGDDPGESFE KMSMVLKKIK DFVQTYNPNL DDAPLRLKSS LPKSRDDDRD MLIPPEEFRC PISLELMTDP
201: VIVSSGQTYE RECIKKWLEG GHLTCPKTQE TLTSDIMTPN YVLRSLIAQW CESNGIEPPK RPNISQPSSK ASSSSSAPDD EHNKIEELLL KLTSQQPEDR
301: RSAAGEIRLL AKQNNHNRVA IAASGAIPLL VNLLTISNDS RTQEHAVTSI LNLSICQENK GKIVYSSGAV PGIVHVLQKG SMEARENAAA TLFSLSVIDE
401: NKVTIGAAGA IPPLVTLLSE GSQRGKKDAA TALFNLCIFQ GNKGKAVRAG LVPVLMRLLT EPESGMVDES LSILAILSSH PDGKSEVGAA DAVPVLVDFI
501: RSGSPRNKEN SAAVLVHLCS WNQQHLIEAQ KLGIMDLLIE MAENGTDRGK RKAAQLLNRF SRFNDQQKQH SGLGLEDQIS LI
101: VRRVAEKLQL MTITDLTQES LALLDMVSSS GGDDPGESFE KMSMVLKKIK DFVQTYNPNL DDAPLRLKSS LPKSRDDDRD MLIPPEEFRC PISLELMTDP
201: VIVSSGQTYE RECIKKWLEG GHLTCPKTQE TLTSDIMTPN YVLRSLIAQW CESNGIEPPK RPNISQPSSK ASSSSSAPDD EHNKIEELLL KLTSQQPEDR
301: RSAAGEIRLL AKQNNHNRVA IAASGAIPLL VNLLTISNDS RTQEHAVTSI LNLSICQENK GKIVYSSGAV PGIVHVLQKG SMEARENAAA TLFSLSVIDE
401: NKVTIGAAGA IPPLVTLLSE GSQRGKKDAA TALFNLCIFQ GNKGKAVRAG LVPVLMRLLT EPESGMVDES LSILAILSSH PDGKSEVGAA DAVPVLVDFI
501: RSGSPRNKEN SAAVLVHLCS WNQQHLIEAQ KLGIMDLLIE MAENGTDRGK RKAAQLLNRF SRFNDQQKQH SGLGLEDQIS LI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.