Factsheet for PGSC0003DMT400001049

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066040.1.1	Tomato	cytosol	97.44	97.59
PGSC0003DMT400078166	Potato	cytosol	78.01	78.37
KRH29807	Soybean	cytosol	72.29	72.62
VIT_06s0004g04530.t01	Wine grape	cytosol	74.25	72.29
KRH24807	Soybean	cytosol	71.99	72.21
AT3G46510.1	Thale cress	cytosol	68.07	68.48
Bra033820.1-P	Field mustard	cytosol	67.77	68.39
Bra018212.1-P	Field mustard	cytosol	67.02	68.36
CDX68379	Canola	cytosol	67.62	68.24
CDX86080	Canola	cytosol	67.02	67.84
CDX99112	Canola	cytosol	66.72	67.63
CDX68380	Canola	cytosol	53.61	66.92
AT2G28830.1	Thale cress	endoplasmic reticulum	56.78	64.78
CDY31736	Canola	cytosol	60.69	62.77
Bra035665.1-P	Field mustard	cytosol	61.14	62.27
CDX77213	Canola	cytosol	60.24	62.21
Os12t0570000-01	Rice	cytosol	47.89	61.51
GSMUA_Achr10P...	Banana	cytosol	56.02	59.42
Zm00001d030732_P001	Maize	cytosol	57.53	57.44
TraesCS4A01G097700.1	Wheat	cytosol	61.14	56.78
OQU79384	Sorghum	cytosol	56.93	56.76
PGSC0003DMT400019235	Potato	cytosol	53.31	56.73
GSMUA_Achr5P28670_001	Banana	cytosol	48.64	56.67
Zm00001d041548_P002	Maize	cytosol	56.93	56.25
HORVU5Hr1G021270.1	Barley	cytosol	56.93	55.43
TraesCS5A01G078400.1	Wheat	cytosol	57.08	55.41
TraesCS5B01G087500.1	Wheat	cytosol	56.63	55.13
GSMUA_Achr5P07140_001	Banana	cytosol	52.11	55.1
Zm00001d028623_P001	Maize	cytosol	60.09	54.96
HORVU5Hr1G021280.1	Barley	cytosol	56.93	54.94
TraesCS5D01G093700.1	Wheat	cytosol	56.48	54.82
GSMUA_Achr6P34170_001	Banana	cytosol	54.52	54.52
Os03t0275900-01	Rice	cytosol	58.73	53.72
OQU92820	Sorghum	cytosol	60.09	53.27
TraesCS4B01G206900.1	Wheat	plastid	60.54	52.48
HORVU4Hr1G059610.2	Barley	cytosol	60.84	52.33
TraesCS4D01G207700.2	Wheat	plastid	60.84	51.99
GSMUA_Achr10P...	Banana	cytosol	57.53	44.21
PGSC0003DMT400015349	Potato	cytosol	42.32	43.43
PGSC0003DMT400078473	Potato	cytosol	41.11	42.0
PGSC0003DMT400025648	Potato	cytosol	40.21	41.14
PGSC0003DMT400075612	Potato	cytosol	39.76	40.93
PGSC0003DMT400016998	Potato	cytosol	26.05	38.53
PGSC0003DMT400030161	Potato	cytosol	19.73	36.59
PGSC0003DMT400027542	Potato	cytosol	19.58	36.52
PGSC0003DMT400077205	Potato	cytosol	37.2	36.38
PGSC0003DMT400011486	Potato	cytosol	17.32	32.21
PGSC0003DMT400082693	Potato	cytosol	11.3	30.74
PGSC0003DMT400034564	Potato	nucleus, plastid	21.08	30.57
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	25.75	30.54
PGSC0003DMT400073254	Potato	cytosol	33.28	30.52
PGSC0003DMT400060674	Potato	plastid	20.63	30.38
PGSC0003DMT400039084	Potato	cytosol	20.03	30.02
PGSC0003DMT400071349	Potato	plastid	30.72	29.48
PGSC0003DMT400026700	Potato	cytosol	34.34	29.31
PGSC0003DMT400062931	Potato	cytosol	29.67	28.89
PGSC0003DMT400046295	Potato	cytosol	35.39	28.62
PGSC0003DMT400027406	Potato	cytosol	11.14	27.72
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	18.83	27.47

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	EntrezGene:102591903	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007166	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537
UniProt:M0ZHT2	InterPro:Neurochondrin	PFAM:PF00514	PFAM:PF04564	PFAM:PF05536	EnsemblPlantsGene:PGSC0003DMG400000396
PGSC:PGSC0003DMG400000396	EnsemblPlants:PGSC0003DMT400001049	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000296D685	InterPro:Ubox_domain
RefSeq:XP_006348996.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000396]

Coordinates

chr11:+:38645002..38653203

Molecular Weight (calculated)

72585.1 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.331

Length

664 amino acids

Sequence
(BLAST)

001: MGEEDKGEVA KKLIEIVNDI SNISDYKISV KKQFCNLARR LKLLTPMFEE IRDNKEKLPV ESMKSLISLK ETLESAKELL KFGSEGSKIY LVLEMEHIMN
101: KFQELTSQLE QALNGIYYEK LEISDEVKEQ VALVLSQFQR AKGRVETPDA ELHEDLLSLY SRSNDAAVDQ DVLRRLVDKL QLTELDDLKQ ESLALHEMVI
201: ATDGDPEERI EKMSMLLKKI KDFVQTENPN IDAYGRDKSS NFSGQVSADG SQKAPVIPDD FRCPISLELM TDPVIVSTGQ TYERSCIEKW LEAGHSTCPK
301: TQQALTSKSL TPNYVLRSLI AQWCEANGIE PPKRPGSSPP KKSASACTPA EHSMIENLLR KLKSGSPEEA RSAAGEIRLL AKRNTDNRVA IAEAGAIPLL
401: VHLLSTPDSR TQEHAVTALL NLSICENNKG HIVTSRAVPG IVHVLRKGSM EARENAAATL FSLSVIDENK VTIGSSGAIP PLVALLSEGT QRGKKDAATA
501: LFNLCIYQGN KGRAIRAGVV PTLMQLLTKP QGGMVDEALA ILAILSSHPE GKAAIGAADA VPVLVDVISN GSPRNKENAA AVLVHLCSGD QHHLVEAQRL
601: GLIGPLTDLV QNGTERGRRK ATQLLERMNR LAEQTKQPQA QAESQTQNQV SRSPPASSTN AIES

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.