CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033820.1-P	Field mustard	cytosol	99.24	99.24
CDX68380	Canola	cytosol	78.12	96.62
CDX86080	Canola	cytosol	93.62	93.9
CDX99112	Canola	cytosol	92.4	92.82
AT3G46510.1	Thale cress	cytosol	92.86	92.58
VIT_06s0004g04530.t01	Wine grape	cytosol	71.73	69.21
KRH29807	Soybean	cytosol	69.15	68.84
Solyc11g066040.1.1	Tomato	cytosol	68.84	68.33
KRH24807	Soybean	cytosol	68.24	67.82
PGSC0003DMT400001049	Potato	cytosol	68.24	67.62
PGSC0003DMT400078166	Potato	cytosol	66.11	65.81
Solyc06g076040.2.1	Tomato	cytosol	65.5	65.2
CDX77213	Canola	cytosol	58.66	60.03
CDY31736	Canola	cytosol	58.36	59.81
Os12t0570000-01	Rice	cytosol	45.44	57.83
GSMUA_Achr10P...	Banana	cytosol	51.67	54.31
GSMUA_Achr5P28670_001	Banana	cytosol	46.96	54.21
Zm00001d030732_P001	Maize	cytosol	54.56	53.98
OQU79384	Sorghum	cytosol	54.41	53.75
Zm00001d041548_P002	Maize	cytosol	54.26	53.12
HORVU5Hr1G021270.1	Barley	cytosol	54.56	52.64
TraesCS5B01G087500.1	Wheat	cytosol	54.26	52.35
TraesCS5A01G078400.1	Wheat	cytosol	54.41	52.34
HORVU5Hr1G021280.1	Barley	cytosol	54.56	52.18
TraesCS5D01G093700.1	Wheat	cytosol	54.1	52.05
GSMUA_Achr5P07140_001	Banana	cytosol	49.39	51.75
CDX78273	Canola	cytosol	49.85	51.73
TraesCS4A01G097700.1	Wheat	cytosol	55.02	50.63
GSMUA_Achr6P34170_001	Banana	cytosol	51.06	50.6
Zm00001d028623_P001	Maize	cytosol	55.62	50.41
Os03t0275900-01	Rice	cytosol	53.65	48.62
OQU92820	Sorghum	cytosol	54.56	47.93
TraesCS4B01G206900.1	Wheat	plastid	54.86	47.13
HORVU4Hr1G059610.2	Barley	cytosol	55.17	47.02
TraesCS4D01G207700.2	Wheat	plastid	54.86	46.46
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	39.82	44.56
CDY12497	Canola	cytosol	40.12	44.22
CDY21412	Canola	cytosol, endoplasmic reticulum	40.58	43.91
CDY04746	Canola	cytosol, endoplasmic reticulum	40.58	43.84
CDX96295	Canola	cytosol, plasma membrane	39.67	42.37
GSMUA_Achr10P...	Banana	cytosol	55.17	42.01
CDX72769	Canola	cytosol	38.75	41.67
CDY28679	Canola	cytosol	16.57	41.44
CDY68037	Canola	cytosol	39.36	39.54
CDX95193	Canola	cytosol	39.36	39.54
CDY04747	Canola	cytosol, golgi	26.14	39.0
CDX73439	Canola	plastid	49.54	36.18
CDX91947	Canola	plastid	18.54	34.56
CDX74298	Canola	plastid	18.24	33.9
CDX74050	Canola	cytosol	23.4	33.77
CDY28059	Canola	cytosol	23.71	33.77
CDY71737	Canola	cytosol	23.56	33.55
CDY32692	Canola	peroxisome	17.93	33.43
CDY02828	Canola	cytosol	17.93	33.33
CDY08002	Canola	cytosol	22.8	32.97
CDY68352	Canola	cytosol	22.34	32.24
CDX90186	Canola	mitochondrion	34.19	31.56
CDY38506	Canola	cytosol	21.73	31.36
CDY43332	Canola	mitochondrion	34.04	31.15
CDX76873	Canola	cytosol, plastid	34.35	30.25
CDX94661	Canola	plastid	32.67	30.24
CDX99816	Canola	plastid	33.13	30.11
CDY18649	Canola	cytosol, plastid	32.52	30.06
CDX81323	Canola	cytosol, plastid	32.83	29.88
CDY48332	Canola	mitochondrion, plastid	31.91	29.83
CDX78262	Canola	cytosol	31.0	29.06
CDX73449	Canola	cytosol	30.85	28.84
CDY12838	Canola	cytosol	30.4	28.61
CDY02891	Canola	cytosol	31.76	28.36
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	31.46	28.05
CDY57440	Canola	cytosol	27.96	27.92
CDY37666	Canola	cytosol, plastid	27.66	27.53
CDX90518	Canola	plastid	19.0	27.47
CDY09688	Canola	cytosol	18.84	27.31
CDY43686	Canola	plastid	27.36	27.23
CDY38931	Canola	cytosol	25.38	27.15
CDX71307	Canola	cytosol	26.9	26.3
CDY31406	Canola	cytosol	26.9	26.26
CDX70810	Canola	cytosol	18.69	26.06
CDY55050	Canola	cytosol	25.23	23.85
CDX93411	Canola	mitochondrion	25.23	23.78
CDY54132	Canola	cytosol	24.01	23.24
CDY24520	Canola	cytosol	23.71	23.15
CDY51235	Canola	extracellular, golgi	18.24	23.12
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	34.19	21.78
CDY04344	Canola	cytosol	10.03	20.69
CDY04342	Canola	cytosol	10.18	20.12
CDX70805	Canola	cytosol	20.21	8.63
CDY51234	Canola	cytosol	20.06	7.97

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078BX63	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	EnsemblPlants:CDX68379	ProteinID:CDX68379	ProteinID:CDX68379.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00125745001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE6AB1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC01g24570D

Coordinates

chrLK031788:-:555748..558474

Molecular Weight (calculated)

71434.3 Da

IEP (calculated)

4.929

GRAVY (calculated)

-0.221

Length

658 amino acids

Sequence
(BLAST)

001: MEEEKGAVAQ SLIDVVNEIS SVSEYRTTVK KLCSNLARRL KLLVPMFEEI RESNEPISED TLKTLVSLKE AMSSAKNHLK FCSQGSKIYL VMEREQVTSK
101: LLEVSVQLEQ SLSKIPYEDL DISDEVREQV ELVLSQFRRA KGRVDASDDE LYEDLQSLCI KSSDVDDYQP TLQRVARKLH LMEIPDLAQE SVALHEMVAS
201: SGGESIEEMA MVLKLIKDFV QIETNNSEDQ SAGVNSSSNG QTSTAASHKI PVIPDDFRCP ISLEMMRDPV IVSTGQTYER TCIDKWIEAG HSTCPKTQQA
301: LTSTTLTPNY VLRSLIAQWC EANDIEPPKP PSSLRPRKVS SFSSPAEANK IEDLMWRLAY GNPEDQRSAA GEIRLLAKRN ADNRVAIAEA GAIPLLVGLL
401: ATPDSRIQEH SVTALLNLSI CENNKGAIVS AGAIPGIVQV LKKGSMEARE NAAATLFSLS VIDENKVTIG ALGAIPPLVV LLNEGTQRGK KDAATALFNL
501: CIYQGNKGKA IRAGVIPTLT RLLTEPGSGM VDEALAILAI LSSHPEGKAI IGSSDAVPSL VEFIRTGSPR NRENAAAVLV HLCSVDPQHL VEAQKLGLMG
601: PLIDLAGNGT DRGKRKAAQL LERISRLAEQ QKETAAQAQN TEEAEPTHSA STTEAADT

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.