CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90186	Canola	mitochondrion	96.52	97.34
CDX94661	Canola	plastid	86.37	87.34
AT1G29340.1	Thale cress	plastid	87.34	86.15
CDY48332	Canola	mitochondrion, plastid	82.75	84.52
CDX99816	Canola	plastid	83.17	82.6
KRH21208	Soybean	mitochondrion	69.4	69.69
KRH11061	Soybean	mitochondrion, plastid	69.4	69.69
KRH59027	Soybean	mitochondrion	68.29	68.67
KRH42917	Soybean	mitochondrion	67.32	67.69
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	67.04	66.57
PGSC0003DMT400073254	Potato	cytosol	66.62	66.16
VIT_10s0003g01730.t01	Wine grape	mitochondrion	66.06	65.43
CDY37666	Canola	cytosol, plastid	55.63	60.51
CDY43686	Canola	plastid	55.63	60.51
GSMUA_Achr2P15530_001	Banana	mitochondrion	49.79	54.24
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.98	54.08
TraesCS6B01G222200.1	Wheat	cytosol	30.46	52.27
GSMUA_Achr10P...	Banana	mitochondrion	32.55	51.77
GSMUA_Achr9P28820_001	Banana	mitochondrion	42.98	51.59
Os02t0234300-01	Rice	cytosol	38.94	48.19
Zm00001d053544_P001	Maize	mitochondrion, plastid	46.04	46.95
Zm00001d016225_P001	Maize	plastid	47.15	46.5
EES04812	Sorghum	plastid	46.45	45.82
TraesCS6D01G180400.1	Wheat	plastid	43.95	43.59
TraesCS6A01G190700.1	Wheat	plastid	43.95	43.59
HORVU6Hr1G041430.8	Barley	mitochondrion	44.09	38.47
CDX71307	Canola	cytosol	35.19	37.59
CDY31406	Canola	cytosol	35.19	37.54
CDX78273	Canola	cytosol	30.88	35.02
CDY28679	Canola	cytosol	12.8	34.98
CDX68380	Canola	cytosol	25.45	34.4
CDX68379	Canola	cytosol	31.15	34.04
CDX86080	Canola	cytosol	30.88	33.84
CDX99112	Canola	cytosol	30.6	33.59
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.4	33.5
CDY12497	Canola	cytosol	27.68	33.33
CDY21412	Canola	cytosol, endoplasmic reticulum	27.12	32.07
CDX77213	Canola	cytosol	28.65	32.04
CDX96295	Canola	cytosol, plasma membrane	27.4	31.98
CDY31736	Canola	cytosol	28.51	31.93
CDY04746	Canola	cytosol, endoplasmic reticulum	26.98	31.86
CDX72769	Canola	cytosol	26.7	31.37
CDY04747	Canola	cytosol, golgi	19.05	31.07
CDY68037	Canola	cytosol	27.54	30.23
CDX95193	Canola	cytosol	27.4	30.08
CDX74298	Canola	plastid	14.46	29.38
CDX91947	Canola	plastid	14.33	29.18
CDY32692	Canola	peroxisome	14.33	29.18
CDX74050	Canola	cytosol	18.5	29.17
CDY71737	Canola	cytosol	18.64	29.0
CDY28059	Canola	cytosol	18.5	28.79
CDY08002	Canola	cytosol	18.08	28.57
CDY02828	Canola	cytosol	14.05	28.53
CDY68352	Canola	cytosol	17.52	27.63
CDY24520	Canola	cytosol	25.59	27.3
CDY54132	Canola	cytosol	25.73	27.21
CDY38506	Canola	cytosol	17.25	27.19
CDY18649	Canola	cytosol, plastid	26.56	26.83
CDX76873	Canola	cytosol, plastid	27.68	26.64
CDX81323	Canola	cytosol, plastid	26.43	26.28
CDY55050	Canola	cytosol	24.76	25.57
CDY04344	Canola	cytosol	11.27	25.39
CDX93411	Canola	mitochondrion	24.62	25.36
CDX90518	Canola	plastid	15.99	25.27
CDY57440	Canola	cytosol	23.09	25.19
CDY12838	Canola	cytosol	24.34	25.04
CDY04342	Canola	cytosol	11.54	24.92
CDY09688	Canola	cytosol	15.58	24.67
CDX73439	Canola	plastid	30.74	24.53
CDX78262	Canola	cytosol	23.23	23.79
CDX73449	Canola	cytosol	23.09	23.58
CDY38931	Canola	cytosol	19.75	23.09
CDY02891	Canola	cytosol	23.64	23.07
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	23.64	23.04
CDX70810	Canola	cytosol	14.19	21.61
CDY51235	Canola	extracellular, golgi	14.33	19.85
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	27.68	19.26
CDX70805	Canola	cytosol	15.99	7.46
CDY51234	Canola	cytosol	15.58	6.76

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078HZL6	UniProt:A0A078HZL6	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY43332	ProteinID:CDY43332	ProteinID:CDY43332.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00076387001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE23EF	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC03g59040DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078HZL6]

Coordinates

chrLK032552:+:236618..239303

Molecular Weight (calculated)

78734.2 Da

IEP (calculated)

6.777

GRAVY (calculated)

-0.082

Length

719 amino acids

Sequence
(BLAST)

001: MATAAIFSSL RRRRSPSLEA FLSPVDLSGF PLVQTLAAIS TEIISSFSGT RFSFQRRNAR SLIRKIEIFL VLFESLAESR WGSTPSSSSS SSSTALLCLK
101: ELYLLLYRSK ILLDYCAHSS KLWLLLQTQS ISGYFHDLNQ EISTLLDVFP VNDLNLSDDV REQIELLQSQ SRRSRLYIDN NDESLRRTFY SFLDGFEHGE
201: IPNTLALRSF FVEKLGIKDS KSCRSEIEFL EEQIANHDGD VEPTGSVING FVAITRYCRF LLFGFEEEWR IKNNNNPKKK SKGDGNDGFI TVPKDFVCPI
301: SLDLMTDPVI ISTGQTYDRT SIARWIEEGH CTCPKTGQML VDSRIVPNRA LKNLIVQWCA ASGVSYESEF VTDSPTNEGF VSGLPTKAAV EANKATVSIL
401: IEYLADGSEA AQTVAAREIR LLAKTGKENR EFIAEAGAIP HLRRLLKSEN AVAQENSVTA MLNLSIYEKN KSRIMEEEDC LEAIVSVLVS GLTVEAQENA
501: AATLFSLSAV HEYKKRIAMA DQCVEALASL LQNGTPRGKK DAVTALYNLS THPENCSRMI EGGGVSSLVG ALKNEGVAEE AAGALALLVR QSLGAEAIGK
601: EESAVTGLMW MMRCGTPRGK ENAVAALLEL CRRGGAAVAE RVLRAPAIAG VLQTLLFTGT KRARRKAASL ARVFQRREHA AIRAGGYGFV GDVNGNRDGG
701: NFTTDVSVPM SISISVPVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.