Factsheet for PGSC0003DMT400073254

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT1G29340.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT1G29340.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT1G29340.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT1G29340.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT1G29340.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT1G29340.1	PGSC0003DMT400097662	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	98.07	98.07
KRH11061	Soybean	mitochondrion, plastid	75.69	76.54
KRH21208	Soybean	mitochondrion	75.55	76.4
KRH59027	Soybean	mitochondrion	70.44	71.33
VIT_10s0003g01730.t01	Wine grape	mitochondrion	70.72	70.52
KRH42917	Soybean	mitochondrion	69.34	70.21
AT1G29340.1	Thale cress	plastid	67.4	66.94
CDY43332	Canola	mitochondrion	66.16	66.62
CDX90186	Canola	mitochondrion	65.61	66.62
Bra010834.1-P	Field mustard	mitochondrion	65.61	66.06
CDX94661	Canola	plastid	64.09	65.26
Bra032309.1-P	Field mustard	plastid	62.43	64.2
CDY48332	Canola	mitochondrion, plastid	62.29	64.06
CDX99816	Canola	plastid	63.12	63.12
CDY37666	Canola	cytosol, plastid	49.86	54.61
Bra021899.1-P	Field mustard	plastid	49.72	54.46
GSMUA_Achr9P28820_001	Banana	mitochondrion	44.89	54.26
GSMUA_Achr2P15530_001	Banana	mitochondrion	49.45	54.24
CDY43686	Canola	plastid	49.45	54.16
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.51	53.92
TraesCS6B01G222200.1	Wheat	cytosol	30.94	53.46
GSMUA_Achr10P...	Banana	mitochondrion	32.87	52.65
Os02t0234300-01	Rice	cytosol	39.23	48.88
Zm00001d053544_P001	Maize	mitochondrion, plastid	44.06	45.25
Zm00001d016225_P001	Maize	plastid	45.44	45.13
EES04812	Sorghum	plastid	45.17	44.86
TraesCS6D01G180400.1	Wheat	plastid	44.34	44.28
TraesCS6A01G190700.1	Wheat	plastid	44.2	44.14
HORVU6Hr1G041430.8	Barley	mitochondrion	44.2	38.84
PGSC0003DMT400071349	Potato	plastid	36.19	37.86
PGSC0003DMT400019235	Potato	cytosol	30.66	35.58
PGSC0003DMT400077205	Potato	cytosol	32.04	34.17
PGSC0003DMT400001049	Potato	cytosol	30.52	33.28
PGSC0003DMT400016998	Potato	cytosol	20.58	33.18
PGSC0003DMT400078166	Potato	cytosol	30.25	33.13
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	24.31	31.43
PGSC0003DMT400078473	Potato	cytosol	28.18	31.38
PGSC0003DMT400015349	Potato	cytosol	27.9	31.22
PGSC0003DMT400062931	Potato	cytosol	29.28	31.09
PGSC0003DMT400025648	Potato	cytosol	26.93	30.05
PGSC0003DMT400027542	Potato	cytosol	14.64	29.78
PGSC0003DMT400075612	Potato	cytosol	26.11	29.3
PGSC0003DMT400011486	Potato	cytosol	14.36	29.13
PGSC0003DMT400082693	Potato	cytosol	9.81	29.1
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	18.09	28.79
PGSC0003DMT400030161	Potato	cytosol	14.23	28.77
PGSC0003DMT400039084	Potato	cytosol	16.71	27.31
PGSC0003DMT400034564	Potato	nucleus, plastid	15.47	24.45
PGSC0003DMT400060674	Potato	plastid	15.06	24.17
PGSC0003DMT400027406	Potato	cytosol	8.7	23.6
PGSC0003DMT400026700	Potato	cytosol	25.0	23.26
PGSC0003DMT400046295	Potato	cytosol	26.38	23.26

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:ABK96801	ProteinID:ABK96801.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EMBL:EF091878	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M1CRP1	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400028462	PGSC:PGSC0003DMG400028462
EnsemblPlants:PGSC0003DMT400073254	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00029528C9	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

ACRE 276 [Source:PGSC_GENE;Acc:PGSC0003DMG400028462]

Coordinates

chr2:-:31447687..31450302

Molecular Weight (calculated)

79301.0 Da

IEP (calculated)

8.235

GRAVY (calculated)

-0.028

Length

724 amino acids

Sequence
(BLAST)

001: MASAAIFSSL RRQRSPTLEA FLAPVDLTDV GLLQTLTALS SELISAYSGK KLPFYQRKNC KSLLRKIQVF SVLLECLLEN NKNRSRGSSD LPFTAFLCFK
101: ELYLLLYRSK ILLDYCSHSS KLWLLLQNHS ISGHFHDLNQ EISTLLDVFP LKDLKSLPED VREQVELLKK QARKSQLFVD KHDEMLRLKL FSFLNEFENG
201: GVPDYAQLYS FFVEKLGICN PRSCRVEIEF LEEQIVNHEG DIEPTSSVLN GFVALMRYCR FLLFGFEEDD MGLRLGKHKK PKRGLISQEI AETFISVPKD
301: FCCPISLDLM RDPVIVATGQ TYDRAPISRW MEEGHCTCPK TGQLLDHTRL VPNRALRNLI MHWCAARKIP YDPLESGDPC VECFPSASPS RAALEANKAT
401: AALLIKQLEN GTQIAKTIAA REIRLLAKTG KENRAYIAEA GAIPHLKNLL SSPDAVAQEN SVTAMLNLSI FDKNKGRIID EVGCLALIVG VLRFGHTTEA
501: RENAAATLFS LSAVHDYKRQ IAKEDGAVEA LAGLLREGSP RGKKDAVTAL FNLSTHTDNC ARMIESGAVT ALVGALGSEG VAEEAAGALA LIVRQQVGAT
601: AVGNEETAVA GLISMMRCGT PRGKENAVAA LLELCRGGGA AATERVLKAP SLASLLQTLL FTGTKRARRK AASLARVFQR CEHASVHYSG FGVGYAFSGN
701: SAAARDSTFP GDVSVSMSIS VPVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.