Factsheet for PGSC0003DMT400060674

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014810.2.1	Tomato	plastid	96.23	96.23
PGSC0003DMT400034564	Potato	nucleus, plastid	81.15	79.91
VIT_00s2269g00010.t01	Wine grape	plastid	75.39	75.22
KRH11541	Soybean	plastid	72.51	71.55
KRH36562	Soybean	plastid	72.28	71.18
KRH51173	Soybean	cytosol	67.18	70.79
KRH01984	Soybean	cytosol	66.3	70.35
CDY09688	Canola	cytosol	68.96	68.5
Bra012713.1-P	Field mustard	cytosol	68.96	68.35
CDX90518	Canola	plastid	68.51	67.91
AT4G16490.1	Thale cress	plastid	70.07	66.95
Bra038470.1-P	Field mustard	plastid	68.96	66.45
GSMUA_Achr4P06990_001	Banana	plastid	52.99	59.31
HORVU7Hr1G038870.1	Barley	plastid	37.25	58.54
GSMUA_Achr3P29830_001	Banana	cytosol	51.66	56.01
GSMUA_Achr4P11070_001	Banana	cytosol	51.22	54.74
HORVU2Hr1G036080.15	Barley	plastid	55.43	54.59
Zm00001d021951_P001	Maize	plastid	55.88	54.19
EER97453	Sorghum	plastid	56.1	54.06
TraesCS2D01G197200.1	Wheat	plastid	54.99	54.03
TraesCS2B01G216300.1	Wheat	plastid	54.77	53.93
TraesCS2A01G190800.1	Wheat	cytosol	51.88	53.67
Os07t0584900-01	Rice	plastid	55.21	53.32
GSMUA_Achr1P22790_001	Banana	mitochondrion	53.44	53.2
Zm00001d006705_P001	Maize	plastid	54.32	52.8
PGSC0003DMT400030161	Potato	cytosol	35.48	44.69
PGSC0003DMT400027542	Potato	cytosol	35.03	44.38
PGSC0003DMT400082693	Potato	cytosol	15.96	29.51
PGSC0003DMT400027406	Potato	cytosol	15.08	25.47
PGSC0003DMT400016998	Potato	cytosol	21.73	21.83
PGSC0003DMT400039084	Potato	cytosol	21.06	21.44
PGSC0003DMT400078166	Potato	cytosol	30.82	21.03
PGSC0003DMT400019235	Potato	cytosol	29.05	20.99
PGSC0003DMT400001049	Potato	cytosol	30.38	20.63
PGSC0003DMT400011486	Potato	cytosol	15.74	19.89
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	19.51	19.34
PGSC0003DMT400046295	Potato	cytosol	35.03	19.24
PGSC0003DMT400015349	Potato	cytosol	27.49	19.17
PGSC0003DMT400026700	Potato	cytosol	32.82	19.02
PGSC0003DMT400078473	Potato	cytosol	26.83	18.62
PGSC0003DMT400077205	Potato	cytosol	27.72	18.41
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	22.17	17.86
PGSC0003DMT400025648	Potato	cytosol	25.28	17.57
PGSC0003DMT400075612	Potato	cytosol	25.06	17.52
PGSC0003DMT400062931	Potato	cytosol	22.84	15.1
PGSC0003DMT400073254	Potato	cytosol	24.17	15.06
PGSC0003DMT400071349	Potato	plastid	20.4	13.29

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102602037	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000225	InterPro:IPR011989	UniProt:M1C693
PFAM:PF00514	EnsemblPlantsGene:PGSC0003DMG400023602	PGSC:PGSC0003DMG400023602	EnsemblPlants:PGSC0003DMT400060674	PFscan:PS50176	PANTHER:PTHR23315
PANTHER:PTHR23315:SF129	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000294BA05	RefSeq:XP_006346779.1	SEG:seg

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400023602]

Coordinates

chr4:+:8809699..8812648

Molecular Weight (calculated)

48783.2 Da

IEP (calculated)

5.718

GRAVY (calculated)

-0.200

Length

451 amino acids

Sequence
(BLAST)

001: MVSLENSHSH VSSTTHYSQT RPYYYTPPPS SAKVHRRSIG RSMRTIRSNL YQTDYENSGP VYENLTDSVV DFRLTELAKK PPVDKSSFSD VEFLDISHTF
101: SDFSAYSSDI SGELERLAYI PNSDPNQSSV SEPEPEPEPC VGFLQRETFS TEIMESIEPE DLQPTVKLCV DSLQSPSVAV KRSAAEKLRF LAKNRADNRA
201: LIGESGAIPA LLPLLRCSDP RTQEHAVTAL LNLSLHEPNK TLITNSGAIK SLIYVLKTGT ETSKQNAACG LLSLALIDEN KLSIGACGAI APLVALLING
301: TNRGKKDALT TLYKLCTVRL NKERAVSAGA VKPLVGLVCE EGTGLAEKAM VVLSSLTGIE MGQESIVEEG GIAALVEVIE DGSDKGKEFA VMTLLQLCVD
401: SVRNRGLLVR EGGIPPLVAL SQTGTAKAKH KAETLLTYLR ESRQEASTST P

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.