Factsheet for PGSC0003DMT400078473

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008772

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	PGSC0003DMT400008772	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008230.2.1	Tomato	cytosol	95.85	95.85
PGSC0003DMT400015349	Potato	cytosol	75.85	76.2
VIT_01s0011g04770.t01	Wine grape	cytosol	64.46	65.57
KRH50347	Soybean	nucleus	61.38	61.01
KRG89279	Soybean	cytosol	60.77	60.68
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.0	59.69
Bra012355.1-P	Field mustard	plasma membrane	53.69	59.35
CDY21412	Canola	cytosol, endoplasmic reticulum	55.38	59.21
Bra024559.1-P	Field mustard	cytosol, plasma membrane	55.38	59.11
CDY04746	Canola	cytosol, endoplasmic reticulum	55.38	59.11
AT1G23030.1	Thale cress	cytosol	55.08	58.5
CDY12497	Canola	cytosol	53.38	58.12
AT1G71020.1	Thale cress	cytosol	55.54	57.48
CDX96295	Canola	cytosol, plasma membrane	53.38	56.33
Bra016165.1-P	Field mustard	cytosol, plasma membrane	53.23	56.17
CDX72769	Canola	cytosol	52.15	55.39
CDY04747	Canola	cytosol, golgi	37.08	54.65
Zm00001d000381_P001	Maize	cytosol	48.77	49.69
EES07310	Sorghum	cytosol	48.31	49.22
TraesCS6D01G274500.1	Wheat	cytosol	48.46	49.14
Os02t0732200-01	Rice	cytosol	48.15	49.14
TraesCS6A01G293600.1	Wheat	cytosol	48.15	48.83
TraesCS6B01G324000.1	Wheat	cytosol	48.15	48.68
GSMUA_Achr9P15600_001	Banana	cytosol	47.08	45.27
PGSC0003DMT400019235	Potato	cytosol	43.08	44.87
PGSC0003DMT400001049	Potato	cytosol	42.0	41.11
PGSC0003DMT400078166	Potato	cytosol	41.08	40.39
HORVU6Hr1G073280.1	Barley	cytosol	48.62	39.35
PGSC0003DMT400027542	Potato	cytosol	20.15	36.8
PGSC0003DMT400016998	Potato	cytosol	25.23	36.53
PGSC0003DMT400030161	Potato	cytosol	20.0	36.31
PGSC0003DMT400075612	Potato	cytosol	35.85	36.12
PGSC0003DMT400025648	Potato	cytosol	35.54	35.59
PGSC0003DMT400077205	Potato	cytosol	32.77	31.37
PGSC0003DMT400011486	Potato	cytosol	16.46	29.97
PGSC0003DMT400039084	Potato	cytosol	19.85	29.12
PGSC0003DMT400073254	Potato	cytosol	31.38	28.18
PGSC0003DMT400071349	Potato	plastid	29.08	27.31
PGSC0003DMT400034564	Potato	nucleus, plastid	19.23	27.29
PGSC0003DMT400060674	Potato	plastid	18.62	26.83
PGSC0003DMT400062931	Potato	cytosol	27.69	26.39
PGSC0003DMT400026700	Potato	cytosol	31.54	26.35
PGSC0003DMT400027406	Potato	cytosol	10.77	26.22
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	21.69	25.18
PGSC0003DMT400046295	Potato	cytosol	31.69	25.09
PGSC0003DMT400082693	Potato	cytosol	9.38	25.0
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	15.85	22.64

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102578614	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M1D067	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400030547	PGSC:PGSC0003DMG400030547	EnsemblPlants:PGSC0003DMT400078473
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002961932	InterPro:Ubox_domain	RefSeq:XP_006344225.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin ligase PUB14 [Source:PGSC_GENE;Acc:PGSC0003DMG400030547]

Coordinates

chr5:+:4055474..4059978

Molecular Weight (calculated)

70584.9 Da

IEP (calculated)

7.795

GRAVY (calculated)

-0.138

Length

650 amino acids

Sequence
(BLAST)

001: MAGGEATAVA GDHPIAIPLR LLHEVSQIST AGFCGKFKKD CTDLARRVTL LAHLFDELKD SNTLLGSSSS SFNSCFSDLS VALQAAKQLL LAANELDPKI
101: HSDVAVKKIN FRFQCITWKL EKALGNFPYD HFDISEEVQE QVELVRAQLR RATEKYGGPV KSNLLSRASS QPLDKEIDLL HSGNSGIGTL HIENIGNIDH
201: EVRPKVGRVP RGSVRNGSYC SQIVQESERI GNSSKLSEVG DLEISGEDDS PFKSHEESKK SNCPVTPTEF ICPISLELMR DPVIVAATGQ TYERSYIQQW
301: IDGGHTTCPK TQQQLHNLTL TPNYALKNLI SDWCAKNNIL QPTVFANGKI KKSDGSFRYV IGEIGAMEVL VRKLSSRSVE DCRAAVAEIR SLSKRSTDNR
401: ILIAEAGAIP VLVKLLTSED GQIQENAVTA VLNLSIFDDN KRIIMLADAI PSIVQVLRAG SMEAKENAAA TIFSLSLGDE NKILIGASGA IPALIDLLLT
501: GNTRGKKDAA SALFNLCIYQ GNKGRAVRAG IIPALLGMLT DSSSCMVDEP LTILSVLANH QEAKEAIAKT STIPVLIDLL RTGLSRSKEN AAAILLSLCK
601: RDSENLSCLC RLGAVIPLTE LTKSGTERAK RKATSLLEHI RKSQQHSTRN

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.