CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 4
vacuole 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21412	Canola	cytosol, endoplasmic reticulum	99.34	99.51
CDY04747	Canola	cytosol, golgi	71.59	98.87
AT1G23030.1	Thale cress	cytosol	90.64	90.2
CDY12497	Canola	cytosol	86.37	88.11
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.06	88.1
CDX96295	Canola	cytosol, plasma membrane	77.34	76.46
CDX72769	Canola	cytosol	76.03	75.65
KRH50347	Soybean	nucleus	63.71	59.33
VIT_01s0011g04770.t01	Wine grape	cytosol	62.23	59.31
KRG89279	Soybean	cytosol	63.38	59.29
PGSC0003DMT400015349	Potato	cytosol	61.08	57.5
Solyc04g007640.2.1	Tomato	cytosol	60.43	56.88
PGSC0003DMT400078473	Potato	cytosol	59.11	55.38
Solyc05g008230.2.1	Tomato	cytosol	58.78	55.08
Zm00001d000381_P001	Maize	cytosol	51.56	49.22
EES07310	Sorghum	cytosol	51.4	49.06
TraesCS6A01G293600.1	Wheat	cytosol	50.9	48.36
TraesCS6D01G274500.1	Wheat	cytosol	50.9	48.36
Os02t0732200-01	Rice	cytosol	50.57	48.35
TraesCS6B01G324000.1	Wheat	cytosol	50.9	48.21
CDY28679	Canola	cytosol	20.2	46.77
GSMUA_Achr9P15600_001	Banana	cytosol	46.31	41.72
CDX86080	Canola	cytosol	44.17	41.01
CDX99112	Canola	cytosol	44.01	40.92
CDX68380	Canola	cytosol	35.47	40.6
CDX68379	Canola	cytosol	43.84	40.58
CDX78273	Canola	cytosol	42.04	40.38
CDY31736	Canola	cytosol	42.04	39.88
CDX77213	Canola	cytosol	41.54	39.35
HORVU6Hr1G073280.1	Barley	cytosol	50.74	38.48
CDY32692	Canola	peroxisome	21.67	37.39
CDX91947	Canola	plastid	21.67	37.39
CDX74298	Canola	plastid	21.51	37.01
CDY02828	Canola	cytosol	21.18	36.44
CDY71737	Canola	cytosol	26.6	35.06
CDY28059	Canola	cytosol	26.6	35.06
CDX74050	Canola	cytosol	25.94	34.65
CDY08002	Canola	cytosol	25.29	33.85
CDX95193	Canola	cytosol	35.63	33.13
CDY68037	Canola	cytosol	35.47	32.98
CDY68352	Canola	cytosol	22.17	29.61
CDY38506	Canola	cytosol	21.51	28.73
CDX73439	Canola	plastid	41.71	28.19
CDX94661	Canola	plastid	32.51	27.85
CDY18649	Canola	cytosol, plastid	32.51	27.81
CDX90186	Canola	mitochondrion	32.35	27.63
CDY37666	Canola	cytosol, plastid	29.89	27.53
CDY43686	Canola	plastid	29.89	27.53
CDX81323	Canola	cytosol, plastid	32.68	27.52
CDX90518	Canola	plastid	20.53	27.47
CDX76873	Canola	cytosol, plastid	33.5	27.31
CDY48332	Canola	mitochondrion, plastid	31.53	27.27
CDY09688	Canola	cytosol	20.2	27.09
CDX99816	Canola	plastid	32.18	27.07
CDY43332	Canola	mitochondrion	31.86	26.98
CDX73449	Canola	cytosol	30.05	25.99
CDX78262	Canola	cytosol	29.72	25.78
CDY57440	Canola	cytosol	27.75	25.64
CDY12838	Canola	cytosol	29.23	25.46
CDX71307	Canola	cytosol	27.91	25.26
CDY31406	Canola	cytosol	27.91	25.22
CDY02891	Canola	cytosol	29.89	24.69
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	29.89	24.66
CDY38931	Canola	cytosol	24.47	24.23
CDX70810	Canola	cytosol	18.39	23.73
CDX93411	Canola	mitochondrion	26.27	22.92
CDY55050	Canola	cytosol	26.11	22.84
CDY51235	Canola	extracellular, golgi	19.21	22.54
CDY24520	Canola	cytosol	24.14	21.81
CDY54132	Canola	cytosol	23.97	21.47
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	33.33	19.65
CDY04344	Canola	cytosol	9.2	17.55
CDY04342	Canola	cytosol	9.52	17.42
CDX70805	Canola	cytosol	19.7	7.79
CDY51234	Canola	cytosol	19.05	7.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078EU28	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDY04746	ProteinID:CDY04746	ProteinID:CDY04746.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00119415001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EF0140	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC05g18430D

Coordinates

chrLK031957:-:390426..392910

Molecular Weight (calculated)

66686.3 Da

IEP (calculated)

8.457

GRAVY (calculated)

-0.152

Length

609 amino acids

Sequence
(BLAST)

001: MAGVNVSPAS LLELIAEIAE IPINAGVFKK DCADLTRRVC LLTHLVEEIR DSNPVDSAAA SSSENDWWSD LVVGLQAAKR LLSSATRFQA RDSSDGAVKR
101: ISFQLQCITW KLEKALSNLP YDLYDISDEV GEQVELARSQ LRRAMQRYGS LNSNKFLNGL SEPMERDAFS NVKIKAEEEK LEGISETVPF GEAKKQLRKS
201: SSISLAFYLS KDADTDRLDK MVTKNTDESK KSDKLTIPVD FLCPVSLELM KDPVIVATGQ TYERAYIQRW IDCGNLTCPK TQQKLENFTL TPNYVLRSLI
301: SRWCTEHNIE QPAGYINGRS RNRGDMSVIK ALVHKLSSRS VEERRNAVSE IRSLSKRSTD NRILIAEAGA IPVLVNLLTS EDVATQENAI TCVLNLSIYD
401: NNKELIMFAG AVTSIVQVLR AGTMEARENA AATLFSLSLA DENKIIIGGS GAIPALVDLL ENGTPRGKKD AATALFNLCI YQGNKGRAVR AGIVPALVKM
501: LSDSSSHRMV DEALTILSVL ASNLDAKAAI VKANTLPALI GILQTGQARN RENAAAILLS LCKRDTEKLV SIGRLGAVVP LMDLSNNGTE RGKRKATSLL
601: ELLRKACQK

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.