Factsheet for AT1G23030.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21412	Canola	cytosol, endoplasmic reticulum	90.36	90.95
Bra024559.1-P	Field mustard	cytosol, plasma membrane	90.36	90.8
CDY04746	Canola	cytosol, endoplasmic reticulum	90.2	90.64
CDY04747	Canola	cytosol, golgi	65.03	90.25
CDY12497	Canola	cytosol	84.8	86.93
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.33	86.73
Bra012355.1-P	Field mustard	plasma membrane	83.17	86.56
AT1G71020.1	Thale cress	cytosol	78.1	76.11
VIT_01s0011g04770.t01	Wine grape	cytosol	63.24	60.56
KRG89279	Soybean	cytosol	63.73	59.91
KRH50347	Soybean	nucleus	63.56	59.48
PGSC0003DMT400015349	Potato	cytosol	61.44	58.11
Solyc04g007640.2.1	Tomato	cytosol	60.62	57.34
PGSC0003DMT400078473	Potato	cytosol	58.5	55.08
Solyc05g008230.2.1	Tomato	cytosol	58.17	54.77
Zm00001d000381_P001	Maize	cytosol	50.16	48.12
Os02t0732200-01	Rice	cytosol	49.67	47.72
EES07310	Sorghum	cytosol	49.67	47.65
TraesCS6D01G274500.1	Wheat	cytosol	49.18	46.96
TraesCS6A01G293600.1	Wheat	cytosol	49.18	46.96
TraesCS6B01G324000.1	Wheat	cytosol	49.18	46.81
GSMUA_Achr9P15600_001	Banana	cytosol	46.73	42.31
AT3G54850.1	Thale cress	cytosol	41.83	40.51
AT3G46510.1	Thale cress	cytosol	43.46	40.3
AT2G28830.1	Thale cress	endoplasmic reticulum	37.91	39.86
HORVU6Hr1G073280.1	Barley	cytosol	49.02	37.36
AT5G58680.1	Thale cress	cytosol	21.08	36.13
AT3G01400.1	Thale cress	cytosol	20.75	35.77
AT3G07360.1	Thale cress	cytosol	25.33	33.7
AT5G18320.1	Thale cress	cytosol	24.18	32.31
AT5G42340.1	Thale cress	cytosol	34.15	31.67
AT5G18340.1	Thale cress	nucleus	20.75	27.85
AT1G29340.1	Thale cress	plastid	32.52	27.3
AT4G16490.1	Thale cress	plastid	20.75	26.91
AT5G18330.1	Thale cress	cytosol	19.44	26.74
AT5G67340.1	Thale cress	cytosol	30.88	26.73
AT5G01830.1	Thale cress	plastid	27.94	25.37
AT3G54790.1	Thale cress	cytosol	31.05	25.0
AT2G23140.1	Thale cress	cytosol	31.86	23.52
AT1G60190.1	Thale cress	cytosol, plastid	24.67	22.01
AT1G10560.1	Thale cress	cytosol	24.84	21.81

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:838911	UniProt:A0A178WCR1	ProteinID:AAB72157.1
ProteinID:AEE30324.1	EMBL:AK221923	InterPro:ARM-like	InterPro:ARM-type_fold	ArrayExpress:AT1G23030	EnsemblPlantsGene:AT1G23030
RefSeq:AT1G23030	TAIR:AT1G23030	RefSeq:AT1G23030-TAIR-G	EnsemblPlants:AT1G23030.1	TAIR:AT1G23030.1	InterPro:Armadillo
EMBL:BT002518	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0051865	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	RefSeq:NP_173716.1	ProteinID:OAP15163.1	PFAM:PF00514	PFAM:PF04564	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52
UniProt:Q8GUG9	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0000162E8E
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]

Coordinates

chr1:+:8156504..8159185

Molecular Weight (calculated)

67359.9 Da

IEP (calculated)

7.841

GRAVY (calculated)

-0.202

Length

612 amino acids

Sequence
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.