Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014787.1-P | Field mustard | cytosol | 85.0 | 87.53 |
| CDY02891 | Canola | cytosol | 84.74 | 87.38 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 84.61 | 87.13 |
| CDX78262 | Canola | cytosol | 79.87 | 86.47 |
| Bra007097.1-P | Field mustard | cytosol | 79.61 | 86.18 |
| CDX73449 | Canola | cytosol | 79.21 | 85.51 |
| VIT_07s0005g03520.t01 | Wine grape | cytosol | 56.18 | 54.26 |
| GSMUA_Achr6P36530_001 | Banana | cytosol | 42.5 | 48.94 |
| PGSC0003DMT400026700 | Potato | cytosol | 49.47 | 48.33 |
| KRG95672 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.71 | 48.28 |
| Solyc09g025270.2.1 | Tomato | cytosol | 47.5 | 48.2 |
| GSMUA_Achr5P21360_001 | Banana | cytosol | 45.66 | 45.72 |
| KRH67390 | Soybean | cytosol, plastid | 50.92 | 45.21 |
| KRH32190 | Soybean | cytosol | 37.89 | 43.44 |
| AT3G01400.1 | Thale cress | cytosol | 19.34 | 41.41 |
| AT5G67340.1 | Thale cress | cytosol | 38.03 | 40.88 |
| AT5G58680.1 | Thale cress | cytosol | 18.03 | 38.38 |
| AT2G23140.1 | Thale cress | cytosol | 41.45 | 38.0 |
| AT3G54850.1 | Thale cress | cytosol | 28.95 | 34.81 |
| AT4G16490.1 | Thale cress | plastid | 20.39 | 32.84 |
| AT3G46510.1 | Thale cress | cytosol | 27.63 | 31.82 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 24.34 | 31.79 |
| AT3G07360.1 | Thale cress | cytosol | 19.08 | 31.52 |
| AT1G23030.1 | Thale cress | cytosol | 25.0 | 31.05 |
| AT5G42340.1 | Thale cress | cytosol | 26.71 | 30.76 |
| AT5G18320.1 | Thale cress | cytosol | 18.16 | 30.13 |
| AT1G71020.1 | Thale cress | cytosol | 24.21 | 29.3 |
| AT5G18330.1 | Thale cress | cytosol | 14.74 | 25.17 |
| AT5G18340.1 | Thale cress | nucleus | 15.0 | 25.0 |
| AT1G29340.1 | Thale cress | plastid | 23.03 | 24.01 |
| AT5G01830.1 | Thale cress | plastid | 20.92 | 23.59 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 18.55 | 20.55 |
| AT1G10560.1 | Thale cress | cytosol | 18.82 | 20.52 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:824644 | ProteinID:AEE79287.1 | EMBL:AK118613 |
| ProteinID:ANM63723.1 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT3G54790 | EnsemblPlantsGene:AT3G54790 | RefSeq:AT3G54790 |
| TAIR:AT3G54790 | RefSeq:AT3G54790-TAIR-G | EnsemblPlants:AT3G54790.1 | TAIR:AT3G54790.1 | InterPro:Armadillo | Unigene:At.1218 |
| ProteinID:CAB77599.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:IPR000225 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | RefSeq:NP_001325795.1 |
| RefSeq:NP_191039.2 | PFAM:PF00514 | PFAM:PF04564 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50176 | PFscan:PS51698 | PANTHER:PTHR23315 |
| PANTHER:PTHR23315:SF119 | UniProt:Q8GWV5 | SMART:SM00185 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 |
| UniParc:UPI000019700D | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
Coordinates
chr3:-:20281535..20285290
Molecular Weight (calculated)
83783.5 Da
IEP (calculated)
6.156
GRAVY (calculated)
-0.189
Length
760 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.