CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67390	Soybean	cytosol, plastid	86.86	82.59
KRH32190	Soybean	cytosol	56.27	69.08
KRH17146	Soybean	cytosol	18.67	63.87
VIT_07s0005g03520.t01	Wine grape	cytosol	59.95	62.01
Solyc09g025270.2.1	Tomato	cytosol	51.6	56.07
PGSC0003DMT400026700	Potato	cytosol	53.07	55.53
CDX73449	Canola	cytosol	46.68	53.98
CDX78262	Canola	cytosol	46.44	53.85
GSMUA_Achr6P36530_001	Banana	cytosol	43.61	53.79
Bra007097.1-P	Field mustard	cytosol	46.31	53.7
Bra014787.1-P	Field mustard	cytosol	47.91	52.85
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	47.79	52.71
CDY02891	Canola	cytosol	47.67	52.65
GSMUA_Achr5P21360_001	Banana	cytosol	48.28	51.78
AT3G54790.1	Thale cress	cytosol	48.28	51.71
KRH15451	Soybean	cytosol	16.09	48.34
KRH52088	Soybean	cytosol	17.57	43.73
KRH04403	Soybean	mitochondrion	19.41	43.65
KRH05594	Soybean	cytosol	18.43	42.61
KRH30135	Soybean	cytosol	42.14	40.93
KRG98177	Soybean	cytosol	42.01	40.67
KRH72794	Soybean	plasma membrane	39.19	39.24
KRH68828	Soybean	cytosol	19.29	36.51
KRG91959	Soybean	cytosol	28.13	36.29
KRG97080	Soybean	cytosol, nucleus	19.53	36.14
KRH34817	Soybean	cytosol	27.76	35.76
KRG99581	Soybean	cytosol	19.78	34.92
KRH46608	Soybean	cytosol	19.66	34.71
KRH51173	Soybean	cytosol	17.81	33.88
KRH01984	Soybean	cytosol	17.57	33.65
KRG92593	Soybean	cytosol	18.3	33.63
KRH00831	Soybean	cytosol	26.17	33.54
KRH40395	Soybean	cytosol	25.8	33.07
KRH11541	Soybean	plastid	18.55	33.04
KRH36562	Soybean	plastid	18.55	32.97
KRH24807	Soybean	cytosol	26.41	32.48
KRH29807	Soybean	cytosol	26.17	32.22
KRH33490	Soybean	cytosol	19.04	29.52
KRH50347	Soybean	nucleus	23.59	29.36
KRG89279	Soybean	cytosol	23.46	29.34
KRG99865	Soybean	cytosol	21.74	28.69
KRH73275	Soybean	cytosol	16.09	25.74
KRH42917	Soybean	mitochondrion	21.99	25.04
KRH59027	Soybean	mitochondrion	21.74	24.76
KRH11061	Soybean	mitochondrion, plastid	21.62	24.58
KRH21208	Soybean	mitochondrion	21.38	24.3
KRH03317	Soybean	cytosol, plastid	19.78	23.82
KRH54418	Soybean	cytosol, plastid	19.41	23.13
KRH76105	Soybean	cytosol, plastid	19.53	22.65
KRH69547	Soybean	cytosol, plastid	19.29	22.02
KRH65448	Soybean	plastid	12.41	20.7

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0R0EYL4	EMBL:ACUP02012130	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G165200	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRG95672	ProteinID:KRG95672	ProteinID:KRG95672.1	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0006ED6269	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:42589752..42594440

Molecular Weight (calculated)

89995.1 Da

IEP (calculated)

7.189

GRAVY (calculated)

-0.292

Length

814 amino acids

Sequence
(BLAST)

001: MVMACEEFCL ILELVSFELT SQINTSSVKC LVNSISRFMH LVCCQAVKPM PLQKNCNNMV GVLKRLKPVL DDIVDFKIPL DENLHRECEE LDMQVNEARE
101: FIEKLGPKMS RIHSVLQSGE LLIKLQNSSY KICHMIVKSL KAPASVLVLG NLQQYMQELQ CLKKEPAMVY IEEALRNQRD NIEPCYDSLK EIIGLLKLTS
201: NQELLKESIA VEKERSNAEV NKTKGNLDEI NQIVNLVCNL RDYVMKFECP EVKSGVSIPP YFRCPLSLEL MSDPVIVASG QTYERQSIQK WLDHGLTVCP
301: NTHHRLVHTN LIPNYTVKAM IANWCEENNV KLPCNSKQSN STRISSPSDH LLHQDLDRQC SFQSSDSSNS YSNQTANAFE KQKDDNSFGS GRGSHRSRNG
401: QTEKFEQQSP APSCSNRRSE SFSSSISSTD YVLPVSKEVS VISNKHHNVE LSGEITNGCP ASPAYKESVI YPWLSGKQFH SPGSKIGRME DENKYESNNN
501: IITSHSKVAS HPVSNLGSDE LITTSHVHEL IEDLQSQSNE TRTAAAEQLR FCTKHNMENR IIVGQCGAIM PLLSLLYSDM KITQEHAVTA LLNLSINEGN
601: KALIMEAGAI EPLIHLLEKG NDGAKENSAA ALFSLSVIDN NKAKIGRSGA VKALVGLLAS GTLRGKKDAA TALFNLSIFH ENKARIVQAG AVKFLVLLLD
701: PTDKMVDKAV ALLANLSTIA EGRIEIAREG GIPSLVEIVE SGSQRGKENA ASILLQMCLH SQKFCTLVLQ EGAVPPLVAL SQSGTPRAKE KMQAQQLLSH
801: FRNQREGATG KGKS

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.