CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
endoplasmic reticulum 1
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	KRG89812	AT2G41100.1	17360592
AT1G29340.1	KRG94975	AT2G41100.1	17360592
AT1G29340.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59027	Soybean	mitochondrion	94.13	94.13
KRH11061	Soybean	mitochondrion, plastid	79.02	78.91
KRH21208	Soybean	mitochondrion	79.02	78.91
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	70.49	69.61
PGSC0003DMT400073254	Potato	cytosol	70.21	69.34
VIT_10s0003g01730.t01	Wine grape	mitochondrion	69.65	68.59
CDX90186	Canola	mitochondrion	67.69	67.88
CDY43332	Canola	mitochondrion	67.69	67.32
Bra010834.1-P	Field mustard	mitochondrion	67.27	66.9
AT1G29340.1	Thale cress	plastid	68.11	66.8
CDX94661	Canola	plastid	64.62	64.98
CDY48332	Canola	mitochondrion, plastid	63.5	64.49
Bra032309.1-P	Field mustard	plastid	63.5	64.49
CDX99816	Canola	plastid	64.9	64.09
CDY37666	Canola	cytosol, plastid	50.91	55.07
GSMUA_Achr2P15530_001	Banana	mitochondrion	50.35	54.55
Bra021899.1-P	Field mustard	plastid	50.35	54.46
CDY43686	Canola	plastid	50.07	54.16
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.41	53.13
GSMUA_Achr9P28820_001	Banana	mitochondrion	44.48	53.09
TraesCS6B01G222200.1	Wheat	cytosol	31.05	52.98
GSMUA_Achr10P...	Banana	mitochondrion	31.89	50.44
Os02t0234300-01	Rice	cytosol	39.44	48.54
Zm00001d016225_P001	Maize	plastid	46.99	46.09
EES04812	Sorghum	plastid	46.85	45.95
Zm00001d053544_P001	Maize	mitochondrion, plastid	45.17	45.82
TraesCS6D01G180400.1	Wheat	plastid	44.76	44.14
TraesCS6A01G190700.1	Wheat	plastid	44.76	44.14
KRH17146	Soybean	cytosol	13.43	40.34
HORVU6Hr1G041430.8	Barley	mitochondrion	44.62	38.71
KRH65448	Soybean	plastid	24.76	36.27
KRH04403	Soybean	mitochondrion	18.04	35.64
KRH15451	Soybean	cytosol	13.43	35.42
KRH76105	Soybean	cytosol, plastid	33.43	34.05
KRH73275	Soybean	cytosol	24.2	33.99
KRG91959	Soybean	cytosol	29.79	33.76
KRH34817	Soybean	cytosol	29.51	33.39
KRH29807	Soybean	cytosol	30.35	32.83
KRH24807	Soybean	cytosol	30.35	32.78
KRH03317	Soybean	cytosol, plastid	30.35	32.1
KRH68828	Soybean	cytosol	19.3	32.09
KRG97080	Soybean	cytosol, nucleus	19.72	32.05
KRH00831	Soybean	cytosol	28.25	31.81
KRH40395	Soybean	cytosol	27.55	31.02
KRH05594	Soybean	cytosol	15.24	30.97
KRG99865	Soybean	cytosol	26.71	30.96
KRG89279	Soybean	cytosol	28.11	30.88
KRH52088	Soybean	cytosol	13.85	30.28
KRH50347	Soybean	nucleus	27.41	29.97
KRH54418	Soybean	cytosol, plastid	28.11	29.43
KRH69547	Soybean	cytosol, plastid	29.23	29.31
KRG92593	Soybean	cytosol	18.04	29.12
KRH33490	Soybean	cytosol	20.98	28.57
KRG99581	Soybean	cytosol	17.9	27.77
KRH46608	Soybean	cytosol	17.9	27.77
KRH51173	Soybean	cytosol	15.94	26.64
KRH01984	Soybean	cytosol	15.8	26.59
KRH11541	Soybean	plastid	16.36	25.6
KRH36562	Soybean	plastid	16.08	25.11
KRH72794	Soybean	plasma membrane	26.71	23.49
KRG98177	Soybean	cytosol	26.85	22.83
KRH30135	Soybean	cytosol	26.71	22.79
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.04	21.99
KRH67390	Soybean	cytosol, plastid	24.48	20.44
KRH32190	Soybean	cytosol	17.9	19.31

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100817070	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02004840	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_08G119700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	UniProt:I1KSH8	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlants:KRH42917	ProteinID:KRH42917	ProteinID:KRH42917.1	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00023390E5	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:9218893..9221687

Molecular Weight (calculated)

78240.1 Da

IEP (calculated)

7.953

GRAVY (calculated)

0.105

Length

715 amino acids

Sequence
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSDV ALLGTLISVA GDIASCFSGH RFPFQRRNSR ALIGKVEIFR SMLGCLRDSA TAGALPPTAV LCLKELYLLL
101: YRSKILLDYC AQSSKLWLLL QNHCVSGHFH DLSQEFSTLL DVFPVGEVGL SDDVREQIEL LQRQSKRAKL FIDNKDDVLR IRLFWFLDEF ESGRVPDSKD
201: LRCFFVDKLR ILDGKSCRVE VEALEEQIVN HEGDVEPTVA VLNGMVAITR YCRFLLFGFE EELEIEIQKK GGKRLITLEI AETFLTVPKE FCCPISLDLM
301: CDPVIISTGQ TYDRRSIWRW MEEGHCTCPK TGLLVSHNRL VPNRALRNLI MQWCSAHGVP YDPPEGVDAS VEMFLSACPS KASLEANQGT ATLLIQQLAD
401: GSHAAKTVAA REIRLLAKTG KENRAFIAQA GAIPHLRNLL SSPSAVAQEN SVTALLNLSI FERNKSMIME EEGCLGSIVE VLRFGHTTEA RENAAATLFS
501: LSAVHDYKKR IADNVGAVEA LAWLLQKGTQ RGKKDAVTAL FNLSTHTENC LRMIEAGAVK AMVVALGNEV VAEEAAGALV LIVRQPVGAM AVVREEAAIT
601: GLIGMMRCGT PRGKENAVAA LLELCRSGGA AATQRVVRVP ALAGLLQTLL FTGTKRARRK AASLARVFQR RENASLHYAG LGVGYAFASD SASTRNTATF
701: VSDVSLPMSI SVSVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.