Factsheet for GSMUA_Achr9P28820_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09440_001	Banana	mitochondrion	70.95	66.61
GSMUA_Achr10P...	Banana	mitochondrion	47.75	63.27
GSMUA_Achr2P15530_001	Banana	mitochondrion	68.28	61.97
TraesCS6B01G222200.1	Wheat	cytosol	33.39	47.73
PGSC0003DMT400073254	Potato	cytosol	54.26	44.89
KRH21208	Soybean	mitochondrion	53.59	44.83
KRH59027	Soybean	mitochondrion	53.42	44.76
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	54.09	44.75
KRH11061	Soybean	mitochondrion, plastid	53.42	44.69
KRH42917	Soybean	mitochondrion	53.09	44.48
EES04812	Sorghum	plastid	52.75	43.35
Zm00001d016225_P001	Maize	plastid	52.75	43.35
AT1G29340.1	Thale cress	plastid	52.75	43.35
CDX90186	Canola	mitochondrion	51.59	43.34
Os02t0234300-01	Rice	cytosol	41.74	43.03
CDY43332	Canola	mitochondrion	51.59	42.98
Bra010834.1-P	Field mustard	mitochondrion	51.59	42.98
VIT_10s0003g01730.t01	Wine grape	mitochondrion	52.09	42.98
Zm00001d053544_P001	Maize	mitochondrion, plastid	50.42	42.84
CDX94661	Canola	plastid	50.42	42.48
CDX99816	Canola	plastid	50.75	41.99
TraesCS6D01G180400.1	Wheat	plastid	50.75	41.93
TraesCS6A01G190700.1	Wheat	plastid	50.58	41.79
CDY48332	Canola	mitochondrion, plastid	49.08	41.76
Bra032309.1-P	Field mustard	plastid	48.91	41.62
Bra021899.1-P	Field mustard	plastid	40.73	36.91
HORVU6Hr1G041430.8	Barley	mitochondrion	50.75	36.89
CDY37666	Canola	cytosol, plastid	40.57	36.76
CDY43686	Canola	plastid	40.4	36.61
GSMUA_Achr8P25140_001	Banana	plastid	22.87	32.62
GSMUA_Achr7P22130_001	Banana	cytosol	33.89	32.07
GSMUA_Achr4P00200_001	Banana	plastid	35.06	29.83
GSMUA_Achr10P...	Banana	cytosol	28.38	27.16
GSMUA_Achr4P05030_001	Banana	cytosol	23.37	26.72
GSMUA_Achr5P28670_001	Banana	cytosol	25.21	26.49
GSMUA_Achr3P00280_001	Banana	cytosol	26.54	26.37
GSMUA_Achr6P06560_001	Banana	cytosol	16.36	26.27
GSMUA_Achr4P04900_001	Banana	cytosol	23.04	26.14
GSMUA_Achr9P01670_001	Banana	cytosol	20.2	25.97
GSMUA_Achr5P07140_001	Banana	cytosol	27.21	25.96
GSMUA_Achr10P...	Banana	cytosol	16.03	25.67
GSMUA_Achr6P34170_001	Banana	cytosol	27.88	25.15
GSMUA_Achr9P12570_001	Banana	cytosol	12.52	25.0
GSMUA_Achr1P24290_001	Banana	cytosol	25.21	24.71
GSMUA_Achr9P14560_001	Banana	cytosol	23.04	23.59
GSMUA_Achr9P15600_001	Banana	cytosol	25.21	22.34
GSMUA_Achr4P01530_001	Banana	plasma membrane	22.54	22.09
GSMUA_Achr3P06160_001	Banana	plastid	20.87	22.05
GSMUA_Achr6P07710_001	Banana	cytosol	13.02	21.85
GSMUA_Achr6P36530_001	Banana	cytosol	23.04	20.91
GSMUA_Achr10P...	Banana	cytosol	12.52	20.16
GSMUA_Achr4P03430_001	Banana	cytosol	9.02	20.07
GSMUA_Achr3P18890_001	Banana	cytosol	11.69	19.5
GSMUA_Achr10P...	Banana	cytosol	27.88	19.33
GSMUA_Achr3P29830_001	Banana	cytosol	12.85	18.51
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	12.52	18.47
GSMUA_Achr4P14130_001	Banana	cytosol	10.68	18.44
GSMUA_Achr4P11070_001	Banana	cytosol	12.85	18.25
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	12.35	17.87
GSMUA_Achr5P21360_001	Banana	cytosol	22.37	17.65
GSMUA_Achr4P06990_001	Banana	plastid	11.85	17.62
GSMUA_Achr5P16030_001	Banana	cytosol	13.52	17.2
GSMUA_Achr1P22790_001	Banana	mitochondrion	12.69	16.78

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G28820_001	EnsemblPlants:GSMUA_Achr9P28820_001
EnsemblPlants:GSMUA_Achr9T28820_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0U4D9	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002950A1C	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 17 [Source:GMGC_GENE;Acc:GSMUA_Achr9G28820_001]

Coordinates

chr9:-:32677125..32679340

Molecular Weight (calculated)

64898.7 Da

IEP (calculated)

8.878

GRAVY (calculated)

0.035

Length

599 amino acids

Sequence
(BLAST)

001: MCSPMAFVAA RRLRYPLSGA FFAPGDLTDA ALVRAIAVLS SDATALSLVP FQRRNATSLV RRLRVLAAFL ESLEESSYPH PPRLPPLAAF CLGELYIFVY
101: RAKLLLEYCS ESSRLWLLLR NPQVSSNFHD LARELATLLD VLPLDDLCLA EDVREQVELL RRQCRRSNLF VDPHDEKLRR KIHSFLARFD DGEAPDPADL
201: RSTYVDGLGI GNASACFVAL TRYCRFLLFG FQEMEVESSC GDQKKASRKR SSSQSSSDLS LTIPKDLCCP ISLDLMKDPV VVSTGQTYDR ASITHWIVEG
301: HRTCPNSGQT LANGGLVPNR ALRSLICRWC AAHGIQIEVP DGAEVSAESL AAACTSKAAI EADKATARIL VRQLSAGSQE SKAVAARELR LLARTGKENR
401: LTVHVLMHGL TAEARENAAA TLFSLSAVHD FKKKIVDQQG AVAALANLLM QGSTRGKRDA VMAVAEEAAA ALQLLVRQPI VAEAVGSEDA AITNLVGLMT
501: RGTPKGKENA VAALQELCRR GGLPVTRRVA RMPALGGLIQ AILFTGTKRA RRKAALLVRM CRRCESPAVM TCESSRGSSF GSGDASVVSV SMAVQVPVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.