Factsheet for GSMUA_Achr9P12570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	61.33	72.44
KRH17146	Soybean	cytosol	55.0	69.33
TraesCS3B01G422200.1	Wheat	cytosol	72.33	49.09
HORVU3Hr1G081380.1	Barley	cytosol	72.0	48.87
TraesCS3A01G390200.1	Wheat	cytosol	71.33	48.75
TraesCS3D01G382500.1	Wheat	cytosol	71.67	48.64
GSMUA_Achr4P03430_001	Banana	cytosol	42.0	46.84
GSMUA_Achr6P07710_001	Banana	cytosol	49.33	41.46
GSMUA_Achr3P18890_001	Banana	cytosol	47.67	39.83
GSMUA_Achr10P...	Banana	cytosol	48.67	39.25
GSMUA_Achr4P01530_001	Banana	plasma membrane	78.67	38.63
GSMUA_Achr4P06990_001	Banana	plastid	49.33	36.72
GSMUA_Achr4P14130_001	Banana	cytosol	41.67	36.02
GSMUA_Achr4P11070_001	Banana	cytosol	50.67	36.02
PGSC0003DMT400027406	Potato	cytosol	31.33	35.21
GSMUA_Achr3P29830_001	Banana	cytosol	47.67	34.38
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	46.0	33.99
TraesCS3B01G443500.1	Wheat	cytosol	56.67	32.14
GSMUA_Achr1P22790_001	Banana	mitochondrion	48.33	32.01
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	43.33	31.4
TraesCS3A01G410000.1	Wheat	cytosol	65.67	31.07
TraesCS3A01G410100.1	Wheat	cytosol	54.33	30.81
GSMUA_Achr5P16030_001	Banana	cytosol	46.33	29.51
CDX76873	Canola	cytosol, plastid	69.67	27.98
GSMUA_Achr10P...	Banana	cytosol	33.67	27.01
Os08t0110500-01	Rice	plasma membrane	74.0	26.94
Solyc01g014230.2.1	Tomato	cytosol	72.67	26.88
GSMUA_Achr6P36530_001	Banana	cytosol	59.0	26.82
TraesCS3D01G527900.1	Wheat	cytosol	74.0	26.71
TraesCS3B01G591000.1	Wheat	cytosol	74.0	26.71
TraesCS3A01G521300.1	Wheat	cytosol	73.67	26.59
HORVU3Hr1G113910.3	Barley	cytosol	74.0	26.49
GSMUA_Achr6P06560_001	Banana	cytosol	32.67	26.27
PGSC0003DMT400046295	Potato	cytosol	71.0	25.94
VIT_07s0129g00590.t01	Wine grape	cytosol	73.33	25.94
Zm00001d035040_P007	Maize	mitochondrion	74.67	25.69
KRH72794	Soybean	plasma membrane	69.33	25.58
AT2G23140.1	Thale cress	cytosol	70.67	25.57
KRG98177	Soybean	cytosol	71.67	25.56
CDY18649	Canola	cytosol, plastid	60.33	25.42
KRH30135	Soybean	cytosol	71.0	25.42
Solyc12g100000.1.1	Tomato	cytosol, plastid	69.33	25.4
CDX81323	Canola	cytosol, plastid	61.0	25.31
EES01872	Sorghum	cytosol	67.67	25.22
AT5G67340.1	Thale cress	cytosol	59.0	25.04
Os01t0884400-01	Rice	plasma membrane	69.67	24.94
Bra037117.1-P	Field mustard	cytosol, plastid	61.0	24.93
Zm00001d049708_P007	Maize	cytosol	71.0	24.15
Bra012155.1-P	Field mustard	cytosol	52.67	23.98
CDY57440	Canola	cytosol	52.67	23.98
GSMUA_Achr5P21360_001	Banana	cytosol	58.67	23.19
CDY12838	Canola	cytosol	53.33	22.89
EES14396	Sorghum	cytosol	74.33	22.14
GSMUA_Achr8P25140_001	Banana	plastid	30.33	21.67
Zm00001d042608_P002	Maize	cytosol	66.33	21.51
GSMUA_Achr9P01670_001	Banana	cytosol	33.0	21.24
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	70.0	20.33
GSMUA_Achr10P...	Banana	cytosol	38.33	18.37
GSMUA_Achr3P00280_001	Banana	cytosol	36.67	18.24
CDY38931	Canola	cytosol	37.0	18.05
Bra032180.1-P	Field mustard	cytosol	34.67	17.81
GSMUA_Achr1P24290_001	Banana	cytosol	36.0	17.68
GSMUA_Achr9P14560_001	Banana	cytosol	33.33	17.09
GSMUA_Achr3P06160_001	Banana	plastid	31.33	16.58
GSMUA_Achr6P34170_001	Banana	cytosol	36.0	16.27
GSMUA_Achr9P15600_001	Banana	cytosol	35.33	15.68
GSMUA_Achr5P28670_001	Banana	cytosol	28.67	15.09
GSMUA_Achr2P15530_001	Banana	mitochondrion	31.67	14.39
GSMUA_Achr4P00200_001	Banana	plastid	33.67	14.35
GSMUA_Achr4P04900_001	Banana	cytosol	24.33	13.83
GSMUA_Achr7P22130_001	Banana	cytosol	29.0	13.74
GSMUA_Achr4P05030_001	Banana	cytosol	24.0	13.74
GSMUA_Achr5P07140_001	Banana	cytosol	27.67	13.22
GSMUA_Achr10P...	Banana	cytosol	36.67	12.73
GSMUA_Achr9P28820_001	Banana	mitochondrion	25.0	12.52
GSMUA_Achr7P09440_001	Banana	mitochondrion	24.67	11.6
GSMUA_Achr10P...	Banana	mitochondrion	9.33	6.19

Protein Annotations

EnsemblPlants:GSMUA_Achr9P12570_001	EnsemblPlants:GSMUA_Achr9T12570_001	EnsemblPlantsGene:GSMUA_Achr9G12570_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI000294FF28	UniProt:M0TZR6	MapMan:35.1	:	:

Description

U-box domain-containing protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G12570_001]

Coordinates

chr9:-:8175348..8180293

Molecular Weight (calculated)

31913.6 Da

IEP (calculated)

6.366

GRAVY (calculated)

0.033

Length

300 amino acids

Sequence
(BLAST)

001: MDLEAMDSRF DISGDESKVF ELIEDLKSNS TDVQRAATAE LRLLARHMEN RMVIANCGAI SLLVGLLHST DPKTQENAVT ALLNLSLSDN KIAIANANAI
101: DPLIHVLKTG NPEAQENSAA TLLSLSVTEE NKLQIGRSGA IGPLVELLAN GTLRGKKDAV SALYNLSTLR DNKLRIVQAG AMSHLVELMD PATGMVDKAV
201: AVLANLASIP EGRNALGQDG GIFVLVEVVE LGSARAKENA AAALLQLCKN SGRFCSLVLQ EGAVPPLVAL SQFGTPRAKE KARALLNCFQ NQGYLHSGRR

Best Arabidopsis Sequence Match ( AT2G23140.4 )
(BLAST)

001: MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD
101: TIVDTFQFLM SSKNHLPDEL SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE AVALERQKEM AEQSENNAEV
201: EFLDQLIVIV NRMHERLLLI KQTQTSSVAI LADFFCPLSL EVMTDPVIVS SGQTYEKAFI KRWIDLGLKV CPKTRQTLTH TTLIPNYTVK ALIANWCETN
301: DVKLPDPNKS TSLNELSPLL SCTDSIPSTG ADVSARKVSN KSHDWDASSS ETGKPSFSSR ATEREGASPS RPASALGASS PGISGNGYGL DARRGSLNDF
401: EDRSNDSREL RTDAPGRSSV SSTTRGSVEN GQTSENHHHR SPSATSTVSN EEFPRADANE NSEESAHATP YSSDASGEIR SGPLAATTSA ATRRDLSDFS
501: PKFMDRRTRG QFWRRPSERL GSRIVSAPSN ETRRDLSEVE TQVKKLVEEL KSSSLDTQRQ ATAELRLLAK HNMDNRIVIG NSGAIVLLVE LLYSTDSATQ
601: ENAVTALLNL SINDNNKKAI ADAGAIEPLI HVLENGSSEA KENSAATLFS LSVIEENKIK IGQSGAIGPL VDLLGNGTPR GKKDAATALF NLSIHQENKA
701: MIVQSGAVRY LIDLMDPAAG MVDKAVAVLA NLATIPEGRN AIGQEGGIPL LVEVVELGSA RGKENAAAAL LQLSTNSGRF CNMVLQEGAV PPLVALSQSG
801: TPRAREKAQA LLSYFRNQRH GNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.