Factsheet for GSMUA_Achr1P22790_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06990_001	Banana	plastid	68.87	77.42
GSMUA_Achr3P29830_001	Banana	cytosol	67.77	73.8
GSMUA_Achr4P11070_001	Banana	cytosol	68.65	73.7
HORVU7Hr1G038870.1	Barley	plastid	41.06	64.81
TraesCS2A01G190800.1	Wheat	cytosol	61.15	63.53
Zm00001d021951_P001	Maize	plastid	63.13	61.51
TraesCS2D01G197200.1	Wheat	plastid	61.81	61.0
TraesCS2B01G216300.1	Wheat	plastid	61.59	60.92
EER97453	Sorghum	plastid	62.91	60.9
Os07t0584900-01	Rice	plastid	62.69	60.81
HORVU2Hr1G036080.15	Barley	plastid	61.15	60.48
Zm00001d006705_P001	Maize	plastid	61.15	59.7
VIT_00s2269g00010.t01	Wine grape	plastid	57.17	57.3
KRH51173	Soybean	cytosol	53.42	56.54
KRH01984	Soybean	cytosol	52.98	56.47
Solyc04g014810.2.1	Tomato	plastid	53.86	54.1
PGSC0003DMT400060674	Potato	plastid	53.2	53.44
KRH11541	Soybean	plastid	53.86	53.39
KRH36562	Soybean	plastid	53.86	53.28
PGSC0003DMT400034564	Potato	nucleus, plastid	53.42	52.84
Solyc11g012440.1.1	Tomato	cytosol, plastid	53.42	52.72
Bra012713.1-P	Field mustard	cytosol	52.54	52.31
CDX90518	Canola	plastid	52.54	52.31
CDY09688	Canola	cytosol	52.32	52.2
Bra038470.1-P	Field mustard	plastid	53.42	51.71
AT4G16490.1	Thale cress	plastid	52.98	50.85
GSMUA_Achr9P12570_001	Banana	cytosol	32.01	48.33
GSMUA_Achr4P03430_001	Banana	cytosol	28.26	47.58
GSMUA_Achr6P07710_001	Banana	cytosol	35.54	45.1
GSMUA_Achr10P...	Banana	cytosol	35.1	42.74
GSMUA_Achr3P18890_001	Banana	cytosol	33.11	41.78
GSMUA_Achr4P14130_001	Banana	cytosol	30.91	40.35
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	34.22	38.18
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	32.01	35.02
GSMUA_Achr5P16030_001	Banana	cytosol	35.76	34.39
GSMUA_Achr10P...	Banana	cytosol	22.74	27.54
GSMUA_Achr6P06560_001	Banana	cytosol	21.63	26.27
GSMUA_Achr4P01530_001	Banana	plasma membrane	34.22	25.37
GSMUA_Achr6P36530_001	Banana	cytosol	32.01	21.97
GSMUA_Achr8P25140_001	Banana	plastid	20.31	21.9
GSMUA_Achr9P01670_001	Banana	cytosol	22.08	21.46
GSMUA_Achr5P21360_001	Banana	cytosol	32.89	19.63
GSMUA_Achr3P06160_001	Banana	plastid	22.74	18.17
GSMUA_Achr9P14560_001	Banana	cytosol	22.3	17.27
GSMUA_Achr3P00280_001	Banana	cytosol	22.96	17.25
GSMUA_Achr1P24290_001	Banana	cytosol	21.19	15.71
GSMUA_Achr9P15600_001	Banana	cytosol	23.4	15.68
GSMUA_Achr10P...	Banana	cytosol	20.31	14.7
GSMUA_Achr4P00200_001	Banana	plastid	22.74	14.63
GSMUA_Achr7P22130_001	Banana	cytosol	20.09	14.38
GSMUA_Achr2P15530_001	Banana	mitochondrion	20.75	14.24
GSMUA_Achr6P34170_001	Banana	cytosol	20.53	14.01
GSMUA_Achr4P05030_001	Banana	cytosol	15.01	12.98
GSMUA_Achr4P04900_001	Banana	cytosol	15.01	12.88
GSMUA_Achr5P28670_001	Banana	cytosol	16.11	12.81
GSMUA_Achr9P28820_001	Banana	mitochondrion	16.78	12.69
GSMUA_Achr7P09440_001	Banana	mitochondrion	17.44	12.38
GSMUA_Achr10P...	Banana	cytosol	21.41	11.23
GSMUA_Achr5P07140_001	Banana	cytosol	14.79	10.67
GSMUA_Achr10P...	Banana	mitochondrion	6.84	6.86

Protein Annotations

EnsemblPlants:GSMUA_Achr1P22790_001	EnsemblPlants:GSMUA_Achr1T22790_001	EnsemblPlantsGene:GSMUA_Achr1G22790_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF129	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI000294AA7D	UniProt:M0S287	MapMan:35.1	:	:

Description

Putative U-box domain-containing protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G22790_001]

Coordinates

chr1:-:17158846..17160507

Molecular Weight (calculated)

47143.3 Da

IEP (calculated)

8.486

GRAVY (calculated)

0.163

Length

453 amino acids

Sequence
(BLAST)

001: MRTVRSYLFH HRPSTGAPPT LPPSSSAAVS ENLTDSVVDF KLRELAVGVG SSVAEPAAST EELLEISREF SDCSSFGSDI SGELQRLASL PRSEAPRSTA
101: SPEIDGIEAL GGTGIGSSPE ILESASLDGV EPVVRACVEG LGSPSAEAKR VAASKIRLLA KHRSDFRALI GASGAIPALV PLLRSTDPAA QESAATALLN
201: LSLEEVNKGR IAAAGAIKPL VYAMRTGTAA AKQNAACALL SLSMIEENRA TIGACGAIPP LVALLVGGSS RGKKDALTTL YKLCSTRRNK ERAVSAGAAV
301: PLVGMVGEPG GGTAEKAMVV LGSLAAIPEG REAIVEAGGI PTLVEAIEAG PARGREFAVH ALLLLCADSP RNRGLLVREG AIPPLVALSQ CGSARAKLKA
401: ETLLGYLREQ RQDMARKGKE RIWVIRLWFF CLGLSSKFCC CLKLLCVGYV RLC

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.