Factsheet for GSMUA_Achr4P03430_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040513.1-P	Field mustard	cytosol	63.2	64.64
CDY28679	Canola	cytosol	62.83	64.26
KRH15451	Soybean	cytosol	62.08	61.62
Solyc12g088360.1.1	Tomato	cytosol	61.71	60.36
GSMUA_Achr4P14130_001	Banana	cytosol	76.58	59.37
GSMUA_Achr6P07710_001	Banana	cytosol	75.84	57.14
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	85.5	56.65
GSMUA_Achr10P...	Banana	cytosol	76.58	55.38
GSMUA_Achr3P18890_001	Banana	cytosol	72.49	54.32
Os07t0587500-01	Rice	cytosol	71.38	53.04
Zm00001d021978_P001	Maize	cytosol	71.0	52.76
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	81.04	52.66
Zm00001d006726_P001	Maize	cytosol	70.26	52.5
EER97464	Sorghum	cytosol	70.63	52.49
TraesCS2B01G213900.1	Wheat	cytosol	69.14	51.52
TraesCS2D01G194400.1	Wheat	cytosol	69.14	51.52
TraesCS2A01G193000.1	Wheat	cytosol	68.4	50.97
KRH52088	Soybean	cytosol	59.48	48.93
Solyc04g077850.2.1	Tomato	cytosol	63.94	48.31
Bra020360.1-P	Field mustard	cytosol	63.2	48.16
PGSC0003DMT400027542	Potato	cytosol	63.57	48.03
CDY02828	Canola	cytosol	62.83	47.74
CDY32692	Canola	peroxisome	62.45	47.59
CDX91947	Canola	plastid	61.34	46.74
CDX74298	Canola	plastid	61.34	46.61
Bra001006.1-P	Field mustard	plastid	61.34	46.61
KRH05594	Soybean	cytosol	60.97	46.59
PGSC0003DMT400030161	Potato	cytosol	61.71	46.37
AT3G01400.1	Thale cress	cytosol	60.97	46.2
AT5G58680.1	Thale cress	cytosol	58.74	44.26
GSMUA_Achr5P16030_001	Banana	cytosol	75.84	43.31
VIT_18s0001g09130.t01	Wine grape	cytosol	60.59	42.01
GSMUA_Achr9P12570_001	Banana	cytosol	46.84	42.0
Os03t0435300-00	Rice	cytosol	56.13	37.75
Zm00001d003967_P001	Maize	plastid	60.97	36.44
GSMUA_Achr4P06990_001	Banana	plastid	49.81	33.25
GSMUA_Achr4P11070_001	Banana	cytosol	48.7	31.04
GSMUA_Achr3P29830_001	Banana	cytosol	46.1	29.81
GSMUA_Achr1P22790_001	Banana	mitochondrion	47.58	28.26
GSMUA_Achr6P06560_001	Banana	cytosol	32.34	23.32
GSMUA_Achr10P...	Banana	cytosol	31.23	22.46
GSMUA_Achr4P01530_001	Banana	plasma membrane	49.44	21.77
GSMUA_Achr9P01670_001	Banana	cytosol	34.2	19.74
GSMUA_Achr8P25140_001	Banana	plastid	30.48	19.52
GSMUA_Achr6P36530_001	Banana	cytosol	45.72	18.64
GSMUA_Achr5P21360_001	Banana	cytosol	47.96	17.0
GSMUA_Achr10P...	Banana	cytosol	32.71	14.06
GSMUA_Achr3P00280_001	Banana	cytosol	31.23	13.93
GSMUA_Achr3P06160_001	Banana	plastid	28.25	13.4
GSMUA_Achr9P15600_001	Banana	cytosol	32.71	13.02
GSMUA_Achr1P24290_001	Banana	cytosol	29.37	12.93
GSMUA_Achr6P34170_001	Banana	cytosol	31.23	12.65
GSMUA_Achr4P00200_001	Banana	plastid	32.34	12.36
GSMUA_Achr9P14560_001	Banana	cytosol	26.77	12.31
GSMUA_Achr7P22130_001	Banana	cytosol	27.14	11.53
GSMUA_Achr2P15530_001	Banana	mitochondrion	27.88	11.36
GSMUA_Achr5P28670_001	Banana	cytosol	22.68	10.7
GSMUA_Achr4P04900_001	Banana	cytosol	20.07	10.23
GSMUA_Achr10P...	Banana	cytosol	32.71	10.19
GSMUA_Achr5P07140_001	Banana	cytosol	22.68	9.71
GSMUA_Achr4P05030_001	Banana	cytosol	17.84	9.16
GSMUA_Achr9P28820_001	Banana	mitochondrion	20.07	9.02
GSMUA_Achr7P09440_001	Banana	mitochondrion	21.19	8.93
GSMUA_Achr10P...	Banana	mitochondrion	8.18	4.87

Protein Annotations

EnsemblPlants:GSMUA_Achr4P03430_001	EnsemblPlants:GSMUA_Achr4T03430_001	EnsemblPlantsGene:GSMUA_Achr4G03430_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF64	PFAM:PF00514	PFscan:PS50176	SMART:SM00185	SUPFAM:SSF48371
UniParc:UPI0002963B42	UniProt:M0SKR0	MapMan:35.1	:	:	:

Description

U-box domain-containing protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03430_001]

Coordinates

chr4:-:2727458..2728362

Molecular Weight (calculated)

28360.6 Da

IEP (calculated)

8.668

GRAVY (calculated)

0.080

Length

269 amino acids

Sequence
(BLAST)

001: MELRHLAKHS PENRLRIARA GAVAPLVSLL SHPDPQLQEH GVTAILNLSL CDENKAPIAA AGAVRHLVRI LRCGTPAARE NAACAILRLA QLDDLGAAIG
101: RSGAIPPLVA LLETGSSRGK KDAATALFAL LAGKENRARA VEAGVVRPLL DLMADPESGM VDKAAFVLHR VLSEPEGRAS AVAEGGVPVL VETVEVGSQR
201: QKEVGMLSLL EICEESAAYR KLVVREGAIP PLVALSQSSS RKIRDKAEAL IELLRQPATP GVNRAKAVE

Best Arabidopsis Sequence Match ( AT2G23140.3 )
(BLAST)

001: MAEQSENNAE VEFLDQLIVI VNRMHERLLL IKQTQTSSVA ILADFFCPLS LEVMTDPVIV SSGQTYEKAF IKRWIDLGLK VCPKTRQTLT HTTLIPNYTV
101: KALIANWCET NDVKLPDPNK STSLNELSPL LSCTDSIPST GADVSARKVS NKSHDWDASS SETGKPSFSS RATEREGASP SRPASALGAS SPGISGNGYG
201: LDARRGSLND FEDRSNDSRE LRTDAPGRSS VSSTTRGSVE NGQTSENHHH RSPSATSTVS NEEFPRADAN ENSEESAHAT PYSSDASGEI RSGPLAATTS
301: AATRRDLSDF SPKFMDRRTR GQFWRRPSER LGSRIVSAPS NETRRDLSEV ETQVKKLVEE LKSSSLDTQR QATAELRLLA KHNMDNRIVI GNSGAIVLLV
401: ELLYSTDSAT QENAVTALLN LSINDNNKKA IADAGAIEPL IHVLENGSSE AKENSAATLF SLSVIEENKI KIGQSGAIGP LVDLLGNGTP RGKKDAATAL
501: FNLSIHQENK AMIVQSGAVR YLIDLMDPAA GMVDKAVAVL ANLATIPEGR NAIGQEGGIP LLVEVVELGS ARGKENAAAA LLQLSTNSGR FCNMVLQEGA
601: VPPLVALSQS GTPRAREKAQ ALLSYFRNQR HGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.