CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15451	Soybean	cytosol	63.3	76.38
Bra040513.1-P	Field mustard	cytosol	57.8	71.86
CDY28679	Canola	cytosol	57.19	71.1
Solyc12g088360.1.1	Tomato	cytosol	59.02	70.18
KRH05594	Soybean	cytosol	74.01	68.75
AT3G01400.1	Thale cress	cytosol	71.25	65.63
PGSC0003DMT400027542	Potato	cytosol	71.25	65.45
Solyc04g077850.2.1	Tomato	cytosol	70.95	65.17
CDX74298	Canola	plastid	69.42	64.12
PGSC0003DMT400030161	Potato	cytosol	70.03	63.97
Bra001006.1-P	Field mustard	plastid	69.11	63.84
CDX91947	Canola	plastid	68.81	63.74
Bra020360.1-P	Field mustard	cytosol	66.97	62.04
CDY32692	Canola	peroxisome	66.67	61.76
CDY02828	Canola	cytosol	66.67	61.58
GSMUA_Achr4P03430_001	Banana	cytosol	48.93	59.48
AT5G58680.1	Thale cress	cytosol	64.83	59.38
VIT_18s0001g09130.t01	Wine grape	cytosol	69.11	58.25
GSMUA_Achr6P07710_001	Banana	cytosol	58.41	53.5
GSMUA_Achr3P18890_001	Banana	cytosol	58.41	53.2
Os07t0587500-01	Rice	cytosol	57.49	51.93
EER97464	Sorghum	cytosol	57.19	51.66
Zm00001d021978_P001	Maize	cytosol	56.88	51.38
TraesCS2B01G213900.1	Wheat	cytosol	56.57	51.25
TraesCS2D01G194400.1	Wheat	cytosol	56.57	51.25
Zm00001d006726_P001	Maize	cytosol	56.27	51.11
TraesCS2A01G193000.1	Wheat	cytosol	56.27	50.97
GSMUA_Achr10P...	Banana	cytosol	57.8	50.81
KRH17146	Soybean	cytosol	35.78	49.16
GSMUA_Achr4P14130_001	Banana	cytosol	49.85	46.97
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	55.66	44.83
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	54.74	43.24
GSMUA_Achr5P16030_001	Banana	cytosol	57.8	40.13
KRH01984	Soybean	cytosol	47.09	36.24
KRH51173	Soybean	cytosol	46.18	35.28
Os03t0435300-00	Rice	cytosol	41.9	34.25
KRH11541	Soybean	plastid	47.09	33.7
KRH36562	Soybean	plastid	47.09	33.62
Zm00001d003967_P001	Maize	plastid	44.95	32.67
KRH04403	Soybean	mitochondrion	36.09	32.6
KRH68828	Soybean	cytosol	27.83	21.16
KRG92593	Soybean	cytosol	27.83	20.54
KRG97080	Soybean	cytosol, nucleus	26.91	20.0
KRG91959	Soybean	cytosol	37.92	19.65
KRG89279	Soybean	cytosol	38.84	19.51
KRH34817	Soybean	cytosol	37.31	19.3
KRH50347	Soybean	nucleus	37.61	18.81
KRH29807	Soybean	cytosol	37.0	18.31
KRH33490	Soybean	cytosol	29.36	18.29
KRH24807	Soybean	cytosol	37.0	18.28
KRG99581	Soybean	cytosol	25.38	18.0
KRH40395	Soybean	cytosol	34.86	17.95
KRH00831	Soybean	cytosol	34.86	17.95
KRH30135	Soybean	cytosol	45.87	17.9
KRG98177	Soybean	cytosol	45.57	17.72
KRH46608	Soybean	cytosol	24.77	17.57
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.73	17.57
KRH72794	Soybean	plasma membrane	43.12	17.34
KRG99865	Soybean	cytosol	32.72	17.34
KRH67390	Soybean	cytosol, plastid	41.9	16.0
KRH73275	Soybean	cytosol	23.85	15.32
KRH42917	Soybean	mitochondrion	30.28	13.85
KRH11061	Soybean	mitochondrion, plastid	30.28	13.83
KRH59027	Soybean	mitochondrion	29.97	13.71
KRH21208	Soybean	mitochondrion	29.97	13.69
KRH76105	Soybean	cytosol, plastid	25.69	11.97
KRH54418	Soybean	cytosol, plastid	22.94	10.98
KRH03317	Soybean	cytosol, plastid	21.71	10.5
KRH69547	Soybean	cytosol, plastid	22.63	10.38
KRH32190	Soybean	cytosol	20.18	9.95
KRH65448	Soybean	plastid	11.31	7.58

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100782449	MapMan:35.1	EMBL:ACUP02003404	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlantsGene:GLYMA_06G045900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	UniProt:I1K860	InterPro:IPR000225
InterPro:IPR011989	EnsemblPlants:KRH52088	ProteinID:KRH52088	ProteinID:KRH52088.1	PFAM:PF00514	PFscan:PS50176
PANTHER:PTHR23315	PANTHER:PTHR23315:SF64	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0002339E4C	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:3480519..3482222

Molecular Weight (calculated)

35014.5 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.024

Length

327 amino acids

Sequence
(BLAST)

001: MFNHDSFSAF SDCNSDRSAE FPTPSSENSD ELIRQLVLKL VSCSIEEQKQ ATMEIRLLAK NKQENRPKIA KAGAIQPLIS LLPSSDLQLQ EYVVTAILNL
101: SLCDENKELI ASHGAVKALV APLERGTATA KENAACALVR LSHNREEEKV AIGRAGAIPH LVKLLEGGGL RGKKDAATAL YALCSAKENK VRAVRAGIMR
201: GLVELMADLG SSMVDKAVYV VSVVVGVAEA RAALVEEGGI PVLVEIVEVG TQRQKDIAAG VLLQICEESV VYRTMVSREG AIPPLVALSQ SNSNRAKQKA
301: QKLIQLLPQP RSANGAAPTS EMPPIQH

Best Arabidopsis Sequence Match ( AT3G01400.1 )
(BLAST)

001: MEMENHRPGS FTYMGRKFSD LSLNDDSSAF SDCNSDRSGE FPTASSESRR LLLSCASENS DDLINHLVSH LDSSYSIDEQ KQAAMEIRLL SKNKPENRIK
101: IAKAGAIKPL ISLISSSDLQ LQEYGVTAIL NLSLCDENKE SIASSGAIKP LVRALKMGTP TAKENAACAL LRLSQIEENK VAIGRSGAIP LLVNLLETGG
201: FRAKKDASTA LYSLCSAKEN KIRAVQSGIM KPLVELMADF GSNMVDKSAF VMSLLMSVPE SKPAIVEEGG VPVLVEIVEV GTQRQKEMAV SILLQLCEES
301: VVYRTMVARE GAIPPLVALS QAGTSRAKQK AEALIELLRQ PRSISNGGAR SSSQL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SGH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.