CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03317	Soybean	cytosol, plastid	58.71	59.32
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	57.25	57.58
PGSC0003DMT400062931	Potato	cytosol	53.15	53.23
Solyc03g114160.1.1	Tomato	cytosol	53.0	53.08
KRH69547	Soybean	cytosol, plastid	43.19	41.37
GSMUA_Achr9P14560_001	Banana	cytosol	34.85	40.68
GSMUA_Achr3P06160_001	Banana	plastid	30.89	37.21
Os09t0378700-00	Rice	plasma membrane, plastid	37.92	36.38
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	36.02	35.6
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	36.16	35.59
TraesCS2B01G499300.1	Wheat	plasma membrane	35.72	35.41
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	35.72	35.41
Zm00001d020332_P001	Maize	cytosol	36.16	35.39
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	36.16	35.24
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	36.16	35.24
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	36.16	35.24
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	35.87	34.95
KXG35540	Sorghum	plasma membrane	36.46	34.78
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	36.02	34.45
KRH73275	Soybean	cytosol	23.87	32.02
Os08t0415600-00	Rice	cytosol	33.53	31.94
KRH04403	Soybean	mitochondrion	16.84	31.77
KRH17146	Soybean	cytosol	10.54	30.25
KRG91959	Soybean	cytosol	27.23	29.48
KRH21208	Soybean	mitochondrion	30.6	29.19
KRH11061	Soybean	mitochondrion, plastid	30.45	29.05
KRH34817	Soybean	cytosol	26.79	28.96
KRH68828	Soybean	cytosol	18.01	28.6
KRG97080	Soybean	cytosol, nucleus	18.3	28.41
KRH42917	Soybean	mitochondrion	29.43	28.11
KRH59027	Soybean	mitochondrion	29.14	27.83
KRH65448	Soybean	plastid	19.77	27.66
KRH15451	Soybean	cytosol	10.83	27.31
KRG92593	Soybean	cytosol	17.28	26.64
KRH29807	Soybean	cytosol	25.48	26.32
KRH00831	Soybean	cytosol	24.3	26.14
KRH24807	Soybean	cytosol	25.33	26.13
KRG99865	Soybean	cytosol	23.28	25.77
KRG89279	Soybean	cytosol	24.45	25.65
KRH50347	Soybean	nucleus	24.45	25.54
KRH40395	Soybean	cytosol	23.72	25.51
KRH46608	Soybean	cytosol	16.98	25.16
KRG99581	Soybean	cytosol	16.69	24.73
KRH76105	Soybean	cytosol, plastid	25.33	24.64
KRH33490	Soybean	cytosol	18.01	23.43
KRH52088	Soybean	cytosol	10.98	22.94
KRH05594	Soybean	cytosol	11.57	22.44
KRH01984	Soybean	cytosol	12.74	20.47
KRH51173	Soybean	cytosol	12.74	20.33
KRH11541	Soybean	plastid	13.18	19.69
KRH36562	Soybean	plastid	13.18	19.65
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.13	19.41
KRH72794	Soybean	plasma membrane	22.69	19.07
KRH67390	Soybean	cytosol, plastid	23.28	18.57
KRH30135	Soybean	cytosol	22.55	18.38
KRG98177	Soybean	cytosol	22.4	18.19
KRH32190	Soybean	cytosol	16.84	17.35

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	EntrezGene:100810963	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02003519
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G183800	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1KCH7	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH54418	ProteinID:KRH54418	ProteinID:KRH54418.1
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF161	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00023392E3	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:15854440..15856884

Molecular Weight (calculated)

75595.0 Da

IEP (calculated)

8.302

GRAVY (calculated)

0.094

Length

683 amino acids

Sequence
(BLAST)

001: MADKINNSCE HQRRPLSFPA VRPCVSTSPS TLLASLITLA QNICNFHSNS FVFHRRNVRE TTRQIAILLV LFQELHDRGS IIPHSIRLCF SDLHVTFQKI
101: HFLMQDCSRE SARLWMLTKS QFIATQFRVL VREVAIVLDA IPVCCIDINN EIKELVELVT KQANRGNLQL DRNDENEAKR LRFLLAQLER GIEPDVDVVK
201: SVLNYLEIKS WTSCNKEIKF LEDELDFNEE EVSLLNSLIG FLCYSRVVIF ETIDYQSSGM KQIEAKCSME MLSCVVPEDF RCPISLEIMT DPVTISSGQT
301: YNRASIQKWF NSGNLICPKT REKLASTELV PNTALKKLIQ KFCSENGVIV VNPIDHNQTV TKTSDAGSPA AAHAMQFLSW FLSRRLVFGT EEQKTKAAYE
401: IRLLAKSSVF NRACLVEMGT VPPLLDLLAA DDRNLQESAI SALMKLSKHT SGQKLIIESR GLAPILKVLK RGLSLEARHV AAAVIFYLSS SKEYRKLIGE
501: NPDVIPALVE MVKEETTFGK NNSVVAIFGL LLRRKNHAIV LSAGAVPVLV NTLASSGNAN LVTDSLAVLV ALAESVEGAY ALLRAEALPL VAKILQSATS
601: RSGKEYCASI LLALCVNVGA EVTGVLAKEA SVMPSLYSLL TDGTPHAAKK ARALINVILE FSDKRFSGTV GSSVSRQRLV NLN

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.