Factsheet for Zm00001d020332_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35540	Sorghum	plasma membrane	93.12	90.78
Os09t0378700-00	Rice	plasma membrane, plastid	76.22	74.72
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	71.63	71.33
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	71.06	70.76
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	70.92	70.61
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	70.63	70.33
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	62.03	62.39
GSMUA_Achr9P14560_001	Banana	cytosol	38.68	46.15
GSMUA_Achr3P06160_001	Banana	plastid	34.24	42.15
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	40.4	41.53
VIT_01s0026g00190.t01	Wine grape	cytosol	39.4	40.26
KRH03317	Soybean	cytosol, plastid	36.53	37.72
KRH69547	Soybean	cytosol, plastid	38.25	37.45
PGSC0003DMT400082693	Potato	cytosol	13.04	37.3
PGSC0003DMT400062931	Potato	cytosol	36.25	37.1
Solyc03g114160.1.1	Tomato	cytosol	36.1	36.95
KRH54418	Soybean	cytosol, plastid	35.39	36.16
AT1G60190.1	Thale cress	cytosol, plastid	34.96	35.57
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	28.22	35.18
CDY24520	Canola	cytosol	33.95	35.16
CDY55050	Canola	cytosol	34.81	34.91
AT1G10560.1	Thale cress	cytosol	34.81	34.86
Bra031521.1-P	Field mustard	cytosol	33.81	34.86
CDX93411	Canola	mitochondrion	34.67	34.67
Bra019924.1-P	Field mustard	mitochondrion	34.38	34.53
CDY54132	Canola	cytosol	33.52	34.41
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	22.06	33.85
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	32.81	33.43
CDY04344	Canola	cytosol	15.19	33.23
CDY04342	Canola	cytosol	15.19	31.83
Zm00001d043043_P001	Maize	cytosol	26.36	27.75
Zm00001d012494_P001	Maize	cytosol	26.07	27.45
Zm00001d053544_P001	Maize	mitochondrion, plastid	27.65	27.38
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	25.64	26.72
Zm00001d041548_P002	Maize	cytosol	25.64	26.64
Zm00001d045632_P004	Maize	cytosol, mitochondrion	23.93	26.51
Zm00001d016225_P001	Maize	plastid	27.65	26.47
Zm00001d030732_P001	Maize	cytosol	24.79	26.02
Zm00001d028623_P001	Maize	cytosol	25.79	24.79
Zm00001d000381_P001	Maize	cytosol	22.64	24.76
Zm00001d014845_P001	Maize	cytosol	22.21	24.18
Zm00001d006726_P001	Maize	cytosol	12.46	24.17
Zm00001d021978_P001	Maize	cytosol	12.46	24.03
Zm00001d031263_P001	Maize	cytosol	22.21	24.03
Zm00001d016501_P001	Maize	cytosol	15.76	23.66
Zm00001d021951_P001	Maize	plastid	15.62	23.44
Zm00001d006705_P001	Maize	plastid	15.47	23.28
Zm00001d035040_P007	Maize	mitochondrion	21.49	17.2
Zm00001d049708_P007	Maize	cytosol	20.34	16.1
Zm00001d003967_P001	Maize	plastid	10.17	15.78
Zm00001d042608_P002	Maize	cytosol	20.63	15.57

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100281562	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	UniProt:B6SWJ0	EMBL:EU957105	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	ProteinID:ONM54725.1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF229	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000182C550	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d020332	EnsemblPlants:Zm00001d020332_P001	EnsemblPlants:Zm00001d020332_T001
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

GRMZM2G315431Ubiquitin-protein ligase

Coordinates

chr7:+:107145738..107147834

Molecular Weight (calculated)

73960.5 Da

IEP (calculated)

7.916

GRAVY (calculated)

0.116

Length

698 amino acids

Sequence
(BLAST)

001: MPPPPPTGEP KRRRLLSLMA VYPCESIAPA PLFSSLLALA ADLASQGLGA DAGAFPVLRR GLRQAVRIAG LLLAFLEEVQ DVSVTKTAPL PSSAVLGLTE
101: LHVAMQKLRL LLTDCARRGA RLWVLVNAGL AASELRVILG SVAAAMDALP KDVVDASVEA GELARLMSEH AWRVAVRPDA SDERAARSVR SILEQFKSGV
201: SPDAEDARRV LEHIGVRSWT ECSEEIAFLE DELRTRLDGA GGDSSSDAVL INSLMAILVY CRVVLFDQTD ANPKADAASR PARCPDWLRP EMLQCPIALD
301: LMTDPVTVST GQTYDRESIT RWIKAGCHTC PVTGERLRTA DVVPNAALRG IIERMLLSNG VSLPDPSSSG HRHGALGNTA VPFGPAAAGA ARLAVAYVVA
401: QLSMGSTAER RKATCEARKL CKHNMFYRAC LVEANAVPWL LCLLSSTDAS VQDNAVASLL NLSKHPRGRA ALFEAGGVGL VVDVINVGAR AEARQNAAAV
501: LFYLSSNAEH AEEIGRIPEA IPTLVQLIRD GAHRGRKNAM VSLYGLLQCA SNHGKAVGAG AVSALAGLLS GDRDDLASDA VTLLARLAEQ PAGAQAVLAR
601: PGLVARVVEA LATSASRSGK DHCVALLVSL CRHGGDKVVA LLGRMPGLMS SLYTLVADGS PQTCKRARAL LNLIHRHYEM DGQQPTSEVP GERVVRVL

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.