Factsheet for Zm00001d030732_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79384	Sorghum	cytosol	91.13	90.99
Zm00001d041548_P002	Maize	cytosol	90.08	89.14
Os12t0570000-01	Rice	cytosol	64.21	82.59
HORVU5Hr1G021270.1	Barley	cytosol	81.35	79.33
TraesCS5B01G087500.1	Wheat	cytosol	80.9	78.89
TraesCS5A01G078400.1	Wheat	cytosol	81.05	78.8
TraesCS5D01G093700.1	Wheat	cytosol	80.9	78.66
HORVU5Hr1G021280.1	Barley	cytosol	81.35	78.63
GSMUA_Achr6P34170_001	Banana	cytosol	59.85	59.94
KRH29807	Soybean	cytosol	59.55	59.91
KRH24807	Soybean	cytosol	59.55	59.82
AT2G28830.1	Thale cress	endoplasmic reticulum	51.58	58.93
VIT_06s0004g04530.t01	Wine grape	cytosol	60.15	58.65
Solyc11g066040.1.1	Tomato	cytosol	57.74	57.92
PGSC0003DMT400001049	Potato	cytosol	57.44	57.53
Solyc06g076040.2.1	Tomato	cytosol	55.94	56.28
PGSC0003DMT400078166	Potato	cytosol	55.79	56.13
Zm00001d028623_P001	Maize	cytosol	60.6	55.51
AT3G46510.1	Thale cress	cytosol	54.59	55.0
CDX68380	Canola	cytosol	43.76	54.7
CDY31736	Canola	cytosol	52.78	54.67
CDX77213	Canola	cytosol	52.78	54.59
CDX68379	Canola	cytosol	53.98	54.56
Bra033820.1-P	Field mustard	cytosol	53.98	54.56
Bra018212.1-P	Field mustard	cytosol	53.38	54.53
Bra035665.1-P	Field mustard	cytosol	53.23	54.29
CDX86080	Canola	cytosol	53.53	54.27
CDX99112	Canola	cytosol	53.08	53.89
Zm00001d045632_P004	Maize	cytosol, mitochondrion	47.37	50.0
KRG99865	Soybean	cytosol	43.16	46.52
Zm00001d000381_P001	Maize	cytosol	38.5	40.13
Zm00001d014845_P001	Maize	cytosol	35.94	37.29
Zm00001d016501_P001	Maize	cytosol	25.71	36.77
Zm00001d031263_P001	Maize	cytosol	35.64	36.74
Zm00001d021978_P001	Maize	cytosol	18.05	33.15
Zm00001d006726_P001	Maize	cytosol	17.44	32.22
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	27.82	27.61
Zm00001d053544_P001	Maize	mitochondrion, plastid	28.12	26.52
Zm00001d043043_P001	Maize	cytosol	26.32	26.4
Zm00001d021951_P001	Maize	plastid	18.35	26.24
Zm00001d016225_P001	Maize	plastid	28.72	26.2
Zm00001d012494_P001	Maize	cytosol	26.02	26.09
Zm00001d006705_P001	Maize	plastid	18.2	26.08
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	26.62	25.5
Zm00001d020332_P001	Maize	cytosol	26.02	24.79
Zm00001d035040_P007	Maize	mitochondrion	31.58	24.08
Zm00001d049708_P007	Maize	cytosol	30.53	23.02
Zm00001d003967_P001	Maize	plastid	15.04	22.22
Zm00001d042608_P002	Maize	cytosol	30.08	21.62

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1D6KE36	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
ProteinID:ONM01437.1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000844B3C2
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d030732	EnsemblPlants:Zm00001d030732_P001	EnsemblPlants:Zm00001d030732_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 13

Coordinates

chr1:-:156409808..156421643

Molecular Weight (calculated)

72540.4 Da

IEP (calculated)

5.365

GRAVY (calculated)

-0.168

Length

665 amino acids

Sequence
(BLAST)

001: MAGVSGRGAA ERVAAAVEAV GSGGWEFRNA YRRQLLALSR RIRLLGPFVE ELREVPCVPA VEPERALAVL ADALEEALDL LQLGRDGSRI FLVLDRDKVM
101: KKFHESIVQL EQALCDFSYD KLDISDEVRE QVELVHVQLK RAKERVDMPD DEFYNELLSL YNKSHDPSAE LDILGRLSEK LHLTTITDLT QESLALHEMV
201: ASGGGNDPGE HIEKMSMLLK KIKDFVQTQN PEMGPPMTTK LMDPNGEPRP RNIPDEFRCP ISLELMKDPV IVATGQTYER AFIEKWLASG HQTCPNTQQR
301: MPNTTLTPNY VLRSLIAQWC EANGIDPPKR STQPDKPTSS CSSSERANID ALLSKLCSAD PEEQRSAAAE LRLLAKRNAN NRICIAEAGA IPLLLSLLSS
401: SNLQTQEHAV TALLNLSIHE DNKTSIISSG AVPGIVHVLK NGSMEARENA AATLFSLSVV DEYKVTIGGT GAIPALVVLL SEGSQRGKKD AAAALFNLCI
501: YQGNKGRAIR AGLVPLIMGL VTNPTGALLD EAMAILSILS SHPEGKAAIG AAEPVPVLVE MIGSGSPRNR ENAAAVMLHL SVQSVHLARA QECGIMVPLR
601: DLALNGTERG RRKAVQLLER MSRFLVRQQE GISSHEQMLD ELERQLDAFG PGVTEADILE QSGLL

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.