Factsheet for Os12t0570000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G021270.1	Barley	cytosol	87.81	66.57
TraesCS5B01G087500.1	Wheat	cytosol	87.43	66.28
TraesCS5A01G078400.1	Wheat	cytosol	87.62	66.23
HORVU5Hr1G021280.1	Barley	cytosol	87.81	65.99
TraesCS5D01G093700.1	Wheat	cytosol	87.04	65.79
Zm00001d030732_P001	Maize	cytosol	82.59	64.21
OQU79384	Sorghum	cytosol	82.4	63.96
Zm00001d041548_P002	Maize	cytosol	80.27	61.76
AT2G28830.1	Thale cress	endoplasmic reticulum	58.41	51.89
KRH24807	Soybean	cytosol	64.99	50.76
KRH29807	Soybean	cytosol	64.8	50.68
VIT_06s0004g04530.t01	Wine grape	cytosol	65.18	49.41
Solyc11g066040.1.1	Tomato	cytosol	61.7	48.11
PGSC0003DMT400001049	Potato	cytosol	61.51	47.89
GSMUA_Achr6P34170_001	Banana	cytosol	59.57	46.39
Solyc06g076040.2.1	Tomato	cytosol	58.99	46.14
PGSC0003DMT400078166	Potato	cytosol	58.99	46.14
AT3G46510.1	Thale cress	cytosol	58.8	46.06
Bra035665.1-P	Field mustard	cytosol	57.64	45.71
CDY31736	Canola	cytosol	56.48	45.48
CDX68379	Canola	cytosol	57.83	45.44
Bra033820.1-P	Field mustard	cytosol	57.83	45.44
CDX77213	Canola	cytosol	56.48	45.41
Os06t0102700-01	Rice	plasma membrane	52.22	44.7
Bra018212.1-P	Field mustard	cytosol	56.29	44.7
CDX86080	Canola	cytosol	56.48	44.51
CDX99112	Canola	cytosol	56.09	44.27
Os03t0275900-01	Rice	cytosol	59.96	42.7
CDX68380	Canola	cytosol	43.91	42.67
KRG99865	Soybean	cytosol	45.84	38.41
Os06t0726900-00	Rice	cytosol	26.5	36.05
Os02t0488600-01	Rice	cytosol, nucleus	28.24	34.52
Os07t0587500-01	Rice	cytosol	23.98	34.25
Os02t0732200-01	Rice	cytosol	41.78	33.91
Os08t0481200-01	Rice	cytosol	37.33	30.06
Os02t0234300-01	Rice	cytosol	32.69	29.09
Os04t0348400-01	Rice	cytosol	25.53	28.76
Os03t0435300-00	Rice	cytosol	22.05	28.5
Os07t0584900-01	Rice	plastid	24.95	27.62
Os08t0110500-01	Rice	plasma membrane	36.17	22.69
Os01t0823900-01	Rice	plastid	29.21	22.21
Os05t0476700-01	Rice	plastid	29.01	22.16
Os01t0884400-01	Rice	plasma membrane	34.43	21.24
Os09t0378700-00	Rice	plasma membrane, plastid	28.05	20.37
Os08t0415600-00	Rice	cytosol	27.85	20.08

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A0N7KU87	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAT17730.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006950	GO:GO:0006952	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031348	GO:GO:0043069
GO:GO:0048586	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os12g0570000
EnsemblPlants:Os12t0570000-01	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0000DD9F2A
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RICE SQUAMOSA PROMOTER-BINDING-LIKE 11Armadillo-like helical domain containing protein. (Os12t0570000-01)

Coordinates

chr12:-:23468302..23470284

Molecular Weight (calculated)

55728.2 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.172

Length

517 amino acids

Sequence
(BLAST)

001: LSVYDKNYDP SAELAILGRL SEKLHLMTIT DLTQESLALH EMVASGGGQD PGEHIERMSM LLKKIKDFVQ TQNPDMGPPM ASRVLDSNGD SRPITIPDEF
101: RCPISLELMK DPVIVSTGQT YERACIEKWI ASGHHTCPTT QQKMSTSALT PNYVLRSLIS QWCETNGMEP PKRSTQPNKP TPACSSSERA NIDALLSKLC
201: SPDTEEQRSA AAELRLLAKR NANNRICIAE AGAIPLLLSL LSSSDLRTQE HAVTALLNLS IHEDNKASII SSGAVPSIVH VLKNGSMEAR ENAAATLFSL
301: SVIDEYKVTI GGMGAIPALV VLLGEGSQRG KKDAAAALFN LCIYQGNKGR AIRAGLVPLI MGLVTNPTGA LMDEAMAILS ILSSHPEGKA AIGAAEPVPV
401: LVEMIGSGTP RNRENAAAVM LHLCSGEHHL VHLARAQECG IMVPLRELAL NGTDRGKRKA VQLLERMSRF LVQQQEEQES QSQASAQVPP QATPEQVPEN
501: DIPEQLDSPA SQYPMVV

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.