Factsheet for VIT_06s0004g04530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29807	Soybean	cytosol	72.87	75.19
Solyc11g066040.1.1	Tomato	cytosol	72.87	74.96
KRH24807	Soybean	cytosol	72.14	74.32
PGSC0003DMT400001049	Potato	cytosol	72.29	74.25
PGSC0003DMT400078166	Potato	cytosol	71.26	73.53
Solyc06g076040.2.1	Tomato	cytosol	70.38	72.62
CDX68379	Canola	cytosol	69.21	71.73
Bra033820.1-P	Field mustard	cytosol	68.92	71.43
Bra018212.1-P	Field mustard	cytosol	68.04	71.28
CDX86080	Canola	cytosol	68.33	71.04
CDX99112	Canola	cytosol	68.18	70.99
AT3G46510.1	Thale cress	cytosol	68.62	70.91
CDX68380	Canola	cytosol	55.28	70.86
AT2G28830.1	Thale cress	endoplasmic reticulum	56.3	65.98
Os12t0570000-01	Rice	cytosol	49.41	65.18
CDX77213	Canola	cytosol	59.97	63.61
CDY31736	Canola	cytosol	59.82	63.55
Bra035665.1-P	Field mustard	cytosol	60.41	63.19
GSMUA_Achr10P...	Banana	cytosol	57.33	62.46
VIT_13s0019g04710.t01	Wine grape	cytosol	55.87	60.67
Zm00001d030732_P001	Maize	cytosol	58.65	60.15
OQU79384	Sorghum	cytosol	58.65	60.06
GSMUA_Achr5P28670_001	Banana	cytosol	49.71	59.47
Zm00001d041548_P002	Maize	cytosol	58.5	59.38
TraesCS4A01G097700.1	Wheat	cytosol	62.17	59.3
HORVU5Hr1G021270.1	Barley	cytosol	58.5	58.5
TraesCS5A01G078400.1	Wheat	cytosol	58.65	58.48
TraesCS5B01G087500.1	Wheat	cytosol	58.36	58.36
GSMUA_Achr6P34170_001	Banana	cytosol	56.74	58.28
GSMUA_Achr5P07140_001	Banana	cytosol	53.52	58.12
TraesCS5D01G093700.1	Wheat	cytosol	58.21	58.04
HORVU5Hr1G021280.1	Barley	cytosol	58.5	57.99
Zm00001d028623_P001	Maize	cytosol	61.73	57.99
Os03t0275900-01	Rice	cytosol	60.56	56.89
OQU92820	Sorghum	cytosol	61.73	56.21
HORVU4Hr1G059610.2	Barley	cytosol	62.32	55.05
TraesCS4B01G206900.1	Wheat	plastid	61.73	54.96
TraesCS4D01G207700.2	Wheat	plastid	61.73	54.18
GSMUA_Achr10P...	Banana	cytosol	59.38	46.88
VIT_03s0038g03660.t01	Wine grape	cytosol	41.79	44.46
VIT_01s0011g04770.t01	Wine grape	cytosol	40.32	43.04
VIT_18s0001g14180.t01	Wine grape	cytosol	40.62	40.5
VIT_04s0043g00840.t01	Wine grape	cytosol	26.69	40.0
VIT_00s0524g00030.t01	Wine grape	cytosol	25.66	38.98
VIT_13s0067g01460.t01	Wine grape	cytosol	35.48	35.17
VIT_18s0001g09130.t01	Wine grape	cytosol	19.21	33.76
VIT_00s2269g00010.t01	Wine grape	plastid	21.26	32.08
VIT_10s0003g01730.t01	Wine grape	mitochondrion	33.58	31.54
VIT_07s0005g03520.t01	Wine grape	cytosol	34.9	30.24
VIT_08s0058g01100.t01	Wine grape	plastid	29.77	29.99
VIT_07s0129g00590.t01	Wine grape	cytosol	36.51	29.36
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	29.18	29.31
VIT_01s0026g00190.t01	Wine grape	cytosol	27.71	27.67

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	EntrezGene:100258708	wikigene:100258708	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	ProteinID:CCB43581	ProteinID:CCB43581.1
UniProt:F6GV22	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	EntrezGene:LOC100258708	wikigene:LOC100258708
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	TIGR:TC66044	UniParc:UPI00015C76EA
InterPro:Ubox_domain	ArrayExpress:VIT_06s0004g04530	EnsemblPlantsGene:VIT_06s0004g04530	EnsemblPlants:VIT_06s0004g04530.t01	unigene:Vvi.1015	RefSeq:XP_002283992
RefSeq:XP_002283992.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6GV22]

Coordinates

chr6:-:5497964..5504059

Molecular Weight (calculated)

73757.1 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.269

Length

682 amino acids

Sequence
(BLAST)

001: MEEAKGAPVQ ELIDTVSKIS SISDYRCTVR KEYCNLARRL KLLIPMFEEI RDSKEPIPEE SLKALVSLKE ALESAKELLR FGSEGSKIFM VLEREQVVSK
101: FHEVTANLEQ ALSGISFEKL DITDEVKEQV ELVLSQFRRA KGRADATDAE LYEDLVSLYN KSTDAATDPA VLRRLAEKLQ LMQIDDLTQE SLALHEMVTA
201: SSADPGESIE KMSMLLKKIK DFVQTENPDL TATHGKSLPS SCSGQISTDG NHKSPVIPDD FRCPISLELM NDPVIVSTGQ TYERSCIEKW LEAGHGTCPK
301: TQQTLSSQAL TPNYVLRSLI AQWCESNGIE PPKRPSSSRP SKTASSCSPA ERTNIEILLN KLRSGSPEDQ RNAAGEIRLL AKRNADNRVA IAEAGAIPLL
401: VNLLATPDSR TQEHAVTALL NLSICEDNKS SIINSGAVPG IVYVLKRGSM EARENAAATL FSLSVVDENK VTIGASGAIP PLVTLLSEGT QRGKKDAATA
501: LFNLCIYQGN KGKAVRAGVV PTLMRLLTEP GGGMVDEALA ILAILASHPE GKAAIGSSEA VPVLVEVIGN GSPRNRENAA AVLVHLCAGD QHHLAEAQEL
601: GVMGPLVDLA QNGTDRGKRK AAQLLERMGR FIEQQQQQQA LVQAQAQAQA QAQAQAQPQA HTHTHTESPH TQLSTLMNAV DG

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.