CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68379	Canola	cytosol	96.62	78.12
CDX86080	Canola	cytosol	91.73	74.39
CDX99112	Canola	cytosol	90.04	73.13
AT3G46510.1	Thale cress	cytosol	90.6	73.03
VIT_06s0004g04530.t01	Wine grape	cytosol	70.86	55.28
KRH29807	Soybean	cytosol	68.42	55.07
Solyc11g066040.1.1	Tomato	cytosol	67.67	54.3
KRH24807	Soybean	cytosol	67.29	54.08
PGSC0003DMT400001049	Potato	cytosol	66.92	53.61
PGSC0003DMT400078166	Potato	cytosol	66.35	53.4
Solyc06g076040.2.1	Tomato	cytosol	65.41	52.65
CDX77213	Canola	cytosol	56.95	47.12
CDY31736	Canola	cytosol	56.2	46.57
Os12t0570000-01	Rice	cytosol	42.67	43.91
Zm00001d030732_P001	Maize	cytosol	54.7	43.76
OQU79384	Sorghum	cytosol	54.51	43.54
GSMUA_Achr10P...	Banana	cytosol	50.56	42.97
Zm00001d041548_P002	Maize	cytosol	54.14	42.86
HORVU5Hr1G021270.1	Barley	cytosol	54.32	42.38
TraesCS5A01G078400.1	Wheat	cytosol	54.14	42.11
TraesCS5B01G087500.1	Wheat	cytosol	53.95	42.08
HORVU5Hr1G021280.1	Barley	cytosol	54.32	42.01
TraesCS5D01G093700.1	Wheat	cytosol	53.95	41.96
GSMUA_Achr5P28670_001	Banana	cytosol	44.36	41.4
CDX78273	Canola	cytosol	49.25	41.32
GSMUA_Achr5P07140_001	Banana	cytosol	47.93	40.61
GSMUA_Achr6P34170_001	Banana	cytosol	50.19	40.21
TraesCS4A01G097700.1	Wheat	cytosol	53.76	40.0
Zm00001d028623_P001	Maize	cytosol	54.14	39.67
CDY04747	Canola	cytosol, golgi	32.14	38.78
Os03t0275900-01	Rice	cytosol	52.44	38.43
OQU92820	Sorghum	cytosol	53.76	38.18
TraesCS4B01G206900.1	Wheat	plastid	54.14	37.6
HORVU4Hr1G059610.2	Barley	cytosol	53.76	37.05
TraesCS4D01G207700.2	Wheat	plastid	53.76	36.81
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.04	36.22
CDY12497	Canola	cytosol	40.41	36.01
CDY21412	Canola	cytosol, endoplasmic reticulum	40.6	35.53
CDY04746	Canola	cytosol, endoplasmic reticulum	40.6	35.47
CDX96295	Canola	cytosol, plasma membrane	40.79	35.23
CDX72769	Canola	cytosol	39.29	34.15
GSMUA_Achr10P...	Banana	cytosol	54.7	33.68
CDY68037	Canola	cytosol	40.98	33.28
CDX95193	Canola	cytosol	40.79	33.13
CDX73439	Canola	plastid	49.06	28.97
CDY28679	Canola	cytosol	13.53	27.38
CDY28059	Canola	cytosol	22.74	26.19
CDY71737	Canola	cytosol	22.74	26.19
CDX74050	Canola	cytosol	22.37	26.1
CDX90186	Canola	mitochondrion	34.77	25.95
CDY68352	Canola	cytosol	21.99	25.66
CDY43332	Canola	mitochondrion	34.4	25.45
CDY08002	Canola	cytosol	21.62	25.27
CDY38506	Canola	cytosol	21.62	25.22
CDX99816	Canola	plastid	33.65	24.72
CDY38931	Canola	cytosol	28.57	24.72
CDX76873	Canola	cytosol, plastid	34.59	24.63
CDX94661	Canola	plastid	32.89	24.61
CDY48332	Canola	mitochondrion, plastid	32.52	24.57
CDY32692	Canola	peroxisome	16.17	24.36
CDY02828	Canola	cytosol	16.17	24.29
CDY18649	Canola	cytosol, plastid	32.33	24.16
CDX81323	Canola	cytosol, plastid	32.71	24.07
CDX91947	Canola	plastid	15.79	23.8
CDX74298	Canola	plastid	15.79	23.73
CDY37666	Canola	cytosol, plastid	28.57	23.0
CDY43686	Canola	plastid	28.2	22.69
CDX78262	Canola	cytosol	29.89	22.65
CDY12838	Canola	cytosol	29.7	22.6
CDX73449	Canola	cytosol	29.51	22.3
CDX71307	Canola	cytosol	28.2	22.29
CDY31406	Canola	cytosol	28.2	22.26
CDX70810	Canola	cytosol	19.74	22.25
CDY02891	Canola	cytosol	30.64	22.12
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	30.26	21.82
CDY57440	Canola	cytosol	26.88	21.7
CDY04344	Canola	cytosol	12.41	20.69
CDY51235	Canola	extracellular, golgi	19.92	20.42
CDY55050	Canola	cytosol	26.69	20.4
CDX93411	Canola	mitochondrion	26.69	20.34
CDY04342	Canola	cytosol	12.59	20.12
CDY54132	Canola	cytosol	25.38	19.85
CDY24520	Canola	cytosol	25.0	19.73
CDX90518	Canola	plastid	16.73	19.56
CDY09688	Canola	cytosol	16.54	19.38
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	34.4	17.72
CDX70805	Canola	cytosol	20.49	7.07
CDY51234	Canola	cytosol	19.74	6.34

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078BUG9	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	EnsemblPlants:CDX68380	ProteinID:CDX68380	ProteinID:CDX68380.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00125746001	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EF043F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC01g24580D

Coordinates

chrLK031788:-:559069..561291

Molecular Weight (calculated)

58116.6 Da

IEP (calculated)

4.984

GRAVY (calculated)

-0.191

Length

532 amino acids

Sequence
(BLAST)

001: MEEEKGAVAQ SLIDVVNEIS SVSEYRTTVK KLCSNLARRL KLLVPMFEEI RESNEPINED TLKTLVSLKE AMSSAKNYLK FCSQGSKIYL VMEREQVTSK
101: LLEVSVQLQQ SLSKIPYEDL DISDEVREQV ELVLSQFRRA KGRVDASDDE LYEDLQSLCI KSSDVDDYQP ILQRVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDAGESIE EMAMVLKLIK DFVQIETNNS EDQSAGVNSS SNGQTSTAAS HKIPVIPDDF RCPISLEMMR DPVIVSTGQT YERTCIDKWI EAGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLATPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTH RGKKDAATAL
501: FNLCIYQGNK GKATRAGVIP TFTGVLITRS VG

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.