Factsheet for TraesCS4A01G097700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G207700.2	Wheat	plastid	98.18	90.35
TraesCS4B01G206900.1	Wheat	plastid	96.36	89.95
HORVU4Hr1G059610.2	Barley	cytosol	96.78	89.64
Os03t0275900-01	Rice	cytosol	81.26	80.03
Zm00001d028623_P001	Maize	cytosol	79.02	77.82
OQU92820	Sorghum	cytosol	79.02	75.43
GSMUA_Achr10P...	Banana	cytosol	56.92	65.02
VIT_06s0004g04530.t01	Wine grape	cytosol	59.3	62.17
KRH29807	Soybean	cytosol	57.2	61.88
Solyc11g066040.1.1	Tomato	cytosol	57.34	61.84
GSMUA_Achr5P07140_001	Banana	cytosol	54.13	61.62
KRH24807	Soybean	cytosol	56.92	61.48
PGSC0003DMT400001049	Potato	cytosol	56.78	61.14
PGSC0003DMT400078166	Potato	cytosol	55.1	59.61
Solyc06g076040.2.1	Tomato	cytosol	54.69	59.15
GSMUA_Achr5P28670_001	Banana	cytosol	46.85	58.77
AT2G28830.1	Thale cress	endoplasmic reticulum	47.83	58.76
TraesCS5A01G078400.1	Wheat	cytosol	54.83	57.31
AT3G46510.1	Thale cress	cytosol	51.89	56.21
CDX77213	Canola	cytosol	50.21	55.83
Bra035665.1-P	Field mustard	cytosol	50.91	55.83
CDY31736	Canola	cytosol	50.07	55.76
Bra018212.1-P	Field mustard	cytosol	50.77	55.76
CDX86080	Canola	cytosol	50.91	55.49
CDX99112	Canola	cytosol	50.63	55.27
CDX68379	Canola	cytosol	50.63	55.02
Bra033820.1-P	Field mustard	cytosol	50.63	55.02
CDX68380	Canola	cytosol	40.0	53.76
TraesCS7A01G001900.1	Wheat	cytosol	38.88	52.45
GSMUA_Achr10P...	Banana	cytosol	59.58	49.31
TraesCS4A01G498700.1	Wheat	plastid	41.96	47.39
KRG99865	Soybean	cytosol	39.86	46.19
TraesCS6A01G293600.1	Wheat	cytosol	35.8	39.94
TraesCS7A01G293900.1	Wheat	cytosol	35.24	39.13
TraesCS7A01G549700.1	Wheat	cytosol	34.13	37.77
TraesCS2A01G276400.1	Wheat	nucleus	21.68	33.7
TraesCS2A01G193000.1	Wheat	cytosol	16.78	33.24
TraesCS3A01G390200.1	Wheat	cytosol	19.02	30.98
TraesCS1A01G300000.1	Wheat	cytosol	28.11	30.09
TraesCS2A01G190800.1	Wheat	cytosol	17.62	28.9
TraesCS3A01G345800.1	Wheat	plastid	26.99	28.26
TraesCS6A01G190700.1	Wheat	plastid	27.27	26.9
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	24.9	25.76
TraesCS3A01G521300.1	Wheat	cytosol	29.23	25.15
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	23.92	24.39
TraesCS3A01G410100.1	Wheat	cytosol	18.04	24.39
TraesCS3A01G410000.1	Wheat	cytosol	19.44	21.92

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF142	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4A01G097700	EnsemblPlants:TraesCS4A01G097700.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:108748559..108753904

Molecular Weight (calculated)

76864.6 Da

IEP (calculated)

4.984

GRAVY (calculated)

-0.231

Length

715 amino acids

Sequence
(BLAST)

001: MDEEAKPNTS EDASSKAAAA AAAAVATAAE AATPPTPSGS GSPEGGKEEV GDLVERVAEL VDEIAVISDF RNAYRRQFCN LSRRIRLLAP MMEEVKEGPR
101: PLPEASVAAL RQLRDALAGA RELLRLGSNG SKIFLVLERE KIMQTFQDIT SRLEQALAGI SFDELGISDE VREQVELVHA QFKRAKERSD TSDDILFNDL
201: ISAYNSSTND NVDPDVIQRL SEKLQLVTIS DLNQESLALH EMASGGDPGA VVENMSMLLK KIKDFVQTQD PIGIPASTTN PSRDDNLTSP VVLDDFRCPI
301: SLDLMKDPVI VSTGQTYERG CIERWLEAGH NTCPKTQQKL LNKSLTPNYV LRSLIAQWCE ANGVEPPKRP AQPNNTPATC TASEHSKVIE LLQKLSSQNL
401: ADQRGAAGML RQLAKRSAEN RACIGEAGAI PILVSLLPTT DVSTQEHVVT ALLNLSIYEE NKARIITSGA VPGIVHVLKR GSMEARENSA ATLFSLSLVD
501: ENKVTIGASG AIPALVLLLG NGSQRGKKDA ATALFNLCIY QGNKGKAVRA GLVPILLELL TETESGMVDE ALAILAILSS HPEGKAAISA AAAIPILVGV
601: IRNGSSRNKE NAAAVLVHLC NGEQQQQHLA EAQEQGIVTL LEELAESGTD RGKRKAIQLL ERMNRFLKQQ SQAQGDAMAQ AHGQSQTLSQ ALVQAQADTQ
701: LEESLPPTSS HLPER

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.