Factsheet for Bra018212.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99112	Canola	cytosol	98.31	97.71
CDX86080	Canola	cytosol	97.39	96.65
Bra033820.1-P	Field mustard	cytosol	92.78	91.79
AT3G46510.1	Thale cress	cytosol	90.02	88.79
KRH29807	Soybean	cytosol	69.12	68.08
VIT_06s0004g04530.t01	Wine grape	cytosol	71.28	68.04
Solyc11g066040.1.1	Tomato	cytosol	68.97	67.72
KRH24807	Soybean	cytosol	68.66	67.52
PGSC0003DMT400001049	Potato	cytosol	68.36	67.02
PGSC0003DMT400078166	Potato	cytosol	65.9	64.9
Solyc06g076040.2.1	Tomato	cytosol	65.13	64.15
Bra035665.1-P	Field mustard	cytosol	59.91	59.82
Os12t0570000-01	Rice	cytosol	44.7	56.29
GSMUA_Achr5P28670_001	Banana	cytosol	47.31	54.04
OQU79384	Sorghum	cytosol	54.84	53.6
Zm00001d030732_P001	Maize	cytosol	54.53	53.38
GSMUA_Achr10P...	Banana	cytosol	51.31	53.35
Zm00001d041548_P002	Maize	cytosol	54.38	52.68
GSMUA_Achr5P07140_001	Banana	cytosol	50.23	52.07
HORVU5Hr1G021270.1	Barley	cytosol	54.22	51.76
TraesCS5A01G078400.1	Wheat	cytosol	54.38	51.75
TraesCS5B01G087500.1	Wheat	cytosol	54.07	51.61
TraesCS5D01G093700.1	Wheat	cytosol	53.92	51.32
HORVU5Hr1G021280.1	Barley	cytosol	54.22	51.31
Bra007105.1-P	Field mustard	cytosol	49.92	51.26
TraesCS4A01G097700.1	Wheat	cytosol	55.76	50.77
GSMUA_Achr6P34170_001	Banana	cytosol	51.46	50.45
Zm00001d028623_P001	Maize	cytosol	56.22	50.41
Os03t0275900-01	Rice	cytosol	54.53	48.9
OQU92820	Sorghum	cytosol	55.15	47.93
TraesCS4B01G206900.1	Wheat	plastid	55.61	47.26
HORVU4Hr1G059610.2	Barley	cytosol	55.76	47.02
TraesCS4D01G207700.2	Wheat	plastid	55.45	46.46
Bra012355.1-P	Field mustard	plasma membrane	41.32	45.75
Bra024559.1-P	Field mustard	cytosol, plasma membrane	41.78	44.66
Bra016165.1-P	Field mustard	cytosol, plasma membrane	40.09	42.37
GSMUA_Achr10P...	Banana	cytosol	56.22	42.36
Bra040513.1-P	Field mustard	cytosol	16.9	41.83
Bra027977.1-P	Field mustard	cytosol	39.32	39.26
Bra001006.1-P	Field mustard	plastid	18.13	33.33
Bra029642.1-P	Field mustard	cytosol	23.66	33.33
Bra001247.1-P	Field mustard	cytosol	23.35	33.33
Bra040374.1-P	Field mustard	cytosol	22.89	33.04
Bra020360.1-P	Field mustard	cytosol	17.51	32.29
Bra010834.1-P	Field mustard	mitochondrion	33.64	30.46
Bra037117.1-P	Field mustard	cytosol, plastid	33.49	29.7
Bra032309.1-P	Field mustard	plastid	31.49	29.12
Bra007097.1-P	Field mustard	cytosol	31.18	28.92
Bra014787.1-P	Field mustard	cytosol	31.49	27.78
Bra012155.1-P	Field mustard	cytosol	28.11	27.77
Bra021899.1-P	Field mustard	plastid	27.96	27.53
Bra012713.1-P	Field mustard	cytosol	19.2	27.47
Bra001998.1-P	Field mustard	cytosol	25.19	27.47
Bra032180.1-P	Field mustard	cytosol	24.42	27.23
Bra038470.1-P	Field mustard	plastid	19.51	27.14
Bra006451.1-P	Field mustard	cytosol	19.05	26.55
Bra019022.1-P	Field mustard	cytosol	26.88	25.96
Bra019924.1-P	Field mustard	mitochondrion	26.11	24.46
Bra031521.1-P	Field mustard	cytosol	23.81	22.9
Bra002153.1-P	Field mustard	cytosol	22.73	10.83
Bra006452.1-P	Field mustard	cytosol	20.58	8.07

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	EnsemblPlantsGene:Bra018212	EnsemblPlants:Bra018212.1	EnsemblPlants:Bra018212.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	InterPro:IPR036537	UniProt:M4DNX4	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000253F552	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT3G46510 (E=0.0) PUB13, ATPUB13 | PUB13 (PLANT U-BOX 13); ubiquitin-protein ligase

Coordinates

chrA06:+:11093527..11095688

Molecular Weight (calculated)

70620.6 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.201

Length

651 amino acids

Sequence
(BLAST)

001: MEEEKGAVAQ SLIDLVTEIA SVSDYRIMVK KLCSNLARRL KLLVPMLEEI RESNDPISEE TLGTLVSLKE ALSSAKDHLK FCSGGSKIYL VMEREQVTSK
101: LQEVSVQLEQ SLSKIPYEDL DISDEVKEQV ELVLSQFRRA KGRVDASDDE LYQDLHSLCI KSSDVDDHQP ALQRVANKLQ LMEIPDLAQE SVALHEMVAL
201: SGGENIEEMA MVLKLIKDFA QMDNSDDHKV NGQTSTAASQ KIPAVIPDDF RCPISLEMMR DPVIVSTGQT YERTCIDKWI EAGHSTCPKT QQALTSTTLT
301: PNYVLRSLIA QWCEANDIEP PKPPCSFRPS KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV GLLATPDSRI
401: QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTH RGKKDAATAL FNLCIYQGNK
501: GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILASHPEG KSIIGSLDAV PSLVEFIRTG SPRNRENAAA VLVHLSSNDP QHLVEAQKLG LMGPLIDLAG
601: NGTDRGKRKA AQLLERISRL AEQQKETAAH EQTKEEAEPT DSASTTEAAD P

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.