Factsheet for Bra029642.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71737	Canola	cytosol	99.35	99.35
Bra001247.1-P	Field mustard	cytosol	88.53	89.69
AT3G07360.1	Thale cress	cytosol	87.88	88.26
Bra040374.1-P	Field mustard	cytosol	84.63	86.7
VIT_00s0524g00030.t01	Wine grape	cytosol	59.31	61.02
PGSC0003DMT400016998	Potato	cytosol	58.44	60.13
Solyc09g056450.2.1	Tomato	cytosol	57.79	59.47
KRH46608	Soybean	cytosol	57.79	57.92
KRG99581	Soybean	cytosol	56.93	57.05
VIT_04s0043g00840.t01	Wine grape	cytosol	55.41	56.26
KRH68828	Soybean	cytosol	51.08	54.88
KRG97080	Soybean	cytosol, nucleus	50.65	53.18
GSMUA_Achr6P06560_001	Banana	cytosol	42.64	52.81
GSMUA_Achr10P...	Banana	cytosol	40.48	50.0
GSMUA_Achr9P01670_001	Banana	cytosol	49.57	49.14
Os02t0488600-01	Rice	cytosol, nucleus	43.94	47.99
PGSC0003DMT400011486	Potato	cytosol	37.01	47.9
KRG92593	Soybean	cytosol	45.89	47.86
Solyc04g050780.1.1	Tomato	cytosol	42.86	45.94
PGSC0003DMT400039084	Potato	cytosol	43.07	44.92
EES06804	Sorghum	cytosol	45.02	44.83
Zm00001d016501_P001	Maize	cytosol	44.59	44.3
Solyc04g050770.1.1	Tomato	cytosol	42.42	44.24
Os04t0348400-01	Rice	cytosol	43.29	43.57
TraesCS2A01G276400.1	Wheat	nucleus	43.07	43.26
TraesCS2B01G294100.1	Wheat	nucleus	43.07	43.26
TraesCS2D01G275400.1	Wheat	nucleus	43.07	43.26
HORVU2Hr1G067610.6	Barley	cytosol	43.29	42.19
Bra040513.1-P	Field mustard	cytosol	19.26	33.84
Bra006451.1-P	Field mustard	cytosol	29.44	29.12
Bra001006.1-P	Field mustard	plastid	21.43	27.97
Bra020360.1-P	Field mustard	cytosol	21.0	27.48
Bra012355.1-P	Field mustard	plasma membrane	33.98	26.7
Bra024559.1-P	Field mustard	cytosol, plasma membrane	34.63	26.27
Bra016165.1-P	Field mustard	cytosol, plasma membrane	34.63	25.97
Bra007105.1-P	Field mustard	cytosol	35.06	25.55
Bra035665.1-P	Field mustard	cytosol	34.42	24.39
Bra018212.1-P	Field mustard	cytosol	33.33	23.66
Bra033820.1-P	Field mustard	cytosol	33.55	23.56
Bra027977.1-P	Field mustard	cytosol	32.25	22.85
Bra038470.1-P	Field mustard	plastid	20.56	20.3
Bra007097.1-P	Field mustard	cytosol	30.74	20.23
Bra037117.1-P	Field mustard	cytosol, plastid	31.39	19.75
Bra012713.1-P	Field mustard	cytosol	19.26	19.56
Bra001998.1-P	Field mustard	cytosol	24.89	19.26
Bra014787.1-P	Field mustard	cytosol	30.74	19.24
Bra032309.1-P	Field mustard	plastid	29.0	19.03
Bra010834.1-P	Field mustard	mitochondrion	28.57	18.36
Bra032180.1-P	Field mustard	cytosol	22.94	18.15
Bra019022.1-P	Field mustard	cytosol	26.41	18.1
Bra012155.1-P	Field mustard	cytosol	25.54	17.91
Bra021899.1-P	Field mustard	plastid	25.11	17.55
Bra019924.1-P	Field mustard	mitochondrion	23.81	15.83
Bra031521.1-P	Field mustard	cytosol	22.94	15.66
Bra002153.1-P	Field mustard	cytosol	37.66	12.74
Bra006452.1-P	Field mustard	cytosol	31.82	8.85

Protein Annotations

MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:Bra029642	EnsemblPlants:Bra029642.1
EnsemblPlants:Bra029642.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR013083	UniProt:M4ELH4
PFAM:PF00514	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF227	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002547FAB	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT3G07360 (E=5e-212) PUB9, ATPUB9 | PUB9 (PLANT U-BOX 9); ubiquitin-protein ligase

Coordinates

chrA05:-:22840494..22842248

Molecular Weight (calculated)

51423.2 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.294

Length

462 amino acids

Sequence
(BLAST)

001: MAKTDAFDSD PTAIAKAKEL KREMKKLLMN MEEEDGLSVQ TIDHLQEALS AFKQATMRKM ARSSSLEMLE TVSCPEEFRC PLSKELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIRDMISKW CKTVGLETTT YQSSLVDEEK AVTRSDREIF NSLLCKLSSS NLQDQKSAAK ELRRLTKKGT
201: EFRALFGESS DNITRLVNPL LLHGSTLNQD EQLQEDVITT LLNVSIHDDS NKKLVCENAN VIPLLIDALR RGTVATRSNA AATVFTFSAL DSNKALIGKS
301: GILKPLIDLL EEGNPSAIKD AAAAIFTLCI AHENRSRAVK DGAIKVLGKK ISDGLYVDEL LAILAMLVTH WKAVEELGEL GGVTWLLRIT RESECKRNKE
401: NAIVILHTIC FSDRTKWKEI KEEESSHGTI TKLAREGTSR AQRKANGILD RLRKAMNLTH TA

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.