Factsheet for Bra012355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	98.81	98.81
CDY12497	Canola	cytosol	97.45	95.98
Bra024559.1-P	Field mustard	cytosol, plasma membrane	87.93	84.89
AT1G23030.1	Thale cress	cytosol	86.56	83.17
Bra016165.1-P	Field mustard	cytosol, plasma membrane	77.21	73.7
VIT_01s0011g04770.t01	Wine grape	cytosol	63.27	58.22
KRH50347	Soybean	nucleus	64.46	57.95
KRG89279	Soybean	cytosol	63.78	57.6
PGSC0003DMT400015349	Potato	cytosol	60.54	55.02
Solyc04g007640.2.1	Tomato	cytosol	59.35	53.94
PGSC0003DMT400078473	Potato	cytosol	59.35	53.69
Solyc05g008230.2.1	Tomato	cytosol	58.84	53.23
Zm00001d000381_P001	Maize	cytosol	51.87	47.81
TraesCS6D01G274500.1	Wheat	cytosol	51.87	47.58
EES07310	Sorghum	cytosol	51.53	47.49
TraesCS6B01G324000.1	Wheat	cytosol	51.87	47.43
TraesCS6A01G293600.1	Wheat	cytosol	51.7	47.43
Os02t0732200-01	Rice	cytosol	51.19	47.25
Bra040513.1-P	Field mustard	cytosol	20.58	46.01
GSMUA_Achr9P15600_001	Banana	cytosol	48.13	41.86
Bra018212.1-P	Field mustard	cytosol	45.75	41.32
Bra007105.1-P	Field mustard	cytosol	43.37	40.22
Bra033820.1-P	Field mustard	cytosol	44.56	39.82
HORVU6Hr1G073280.1	Barley	cytosol	51.87	37.98
Bra035665.1-P	Field mustard	cytosol	42.01	37.88
Bra020360.1-P	Field mustard	cytosol	21.43	35.69
Bra001006.1-P	Field mustard	plastid	21.26	35.31
Bra001247.1-P	Field mustard	cytosol	26.53	34.21
Bra029642.1-P	Field mustard	cytosol	26.7	33.98
Bra040374.1-P	Field mustard	cytosol	25.51	33.26
Bra027977.1-P	Field mustard	cytosol	36.22	32.67
Bra021899.1-P	Field mustard	plastid	30.95	27.53
Bra010834.1-P	Field mustard	mitochondrion	33.5	27.4
Bra032309.1-P	Field mustard	plastid	32.31	26.99
Bra037117.1-P	Field mustard	cytosol, plastid	33.5	26.84
Bra012713.1-P	Field mustard	cytosol	20.41	26.37
Bra038470.1-P	Field mustard	plastid	20.92	26.28
Bra007097.1-P	Field mustard	cytosol	31.12	26.07
Bra001998.1-P	Field mustard	cytosol	26.36	25.96
Bra006451.1-P	Field mustard	cytosol	20.24	25.48
Bra012155.1-P	Field mustard	cytosol	28.4	25.34
Bra014787.1-P	Field mustard	cytosol	30.78	24.53
Bra019022.1-P	Field mustard	cytosol	28.06	24.48
Bra032180.1-P	Field mustard	cytosol	24.15	24.32
Bra019924.1-P	Field mustard	mitochondrion	26.7	22.59
Bra031521.1-P	Field mustard	cytosol	24.66	21.42
Bra002153.1-P	Field mustard	cytosol	23.47	10.1
Bra006452.1-P	Field mustard	cytosol	19.9	7.04

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra012355	EnsemblPlants:Bra012355.1	EnsemblPlants:Bra012355.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M4D795	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000254141B	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT1G23030 (E=1e-257) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA07:-:8266083..8268247

Molecular Weight (calculated)

64773.4 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.131

Length

588 amino acids

Sequence
(BLAST)

001: MAGVIIPPAS LLKLIAEIAE IPLNAGVFKK DCTDLTRRVS LLTHLVEEIK DSNQIDSSSS ENDWWSDLVV ALQASKRVLS SARDSSDVAA KRISFQFQCV
101: TWKLEKALSN LPYDLYDISD EVKEQVELAR MQLRRAMQRY GSLNSNKFSS ALSELMERDV KIKAEEEKDE SVAETIHLAE EKKQLTKSPS ISLAFYLSKD
201: ADSERLGKMV TKNTDESSKL TVPVDFLCPV SLELMKDPVI VSTGQTYERA YIQRWIDCGN LTCPKTQQKL QNFTLTPNYV LRSLISRWCT EHNIKQPGNG
301: RCGDMSMIRS LVRSLSNRSL EERRNAVSEI RSLSKRSTDN RIMIAEAGAI PVLVNLLTSE DVATQENAIT CLLNLSIYDN NKELIMFAGA VTSIVQVLRA
401: GTMEARENAA ATLFSLSLAD ENKIIIGGSG AIPALVDLLE NGTTRGKKDA ATALFNLCIY QGNKGRAVRA GIVPALVKML SETSSQRMMV DEALTILSVL
501: ASNLDAKSAM VKANTLPALI GILQTGQGRN RENAAAILLS LCKRDNERLV LIGRLGAVVP LMELSKNGTE RGQRKAVSLL ELLRKACQ

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.