Factsheet for Bra032180.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38931	Canola	cytosol	95.89	91.06
AT2G23140.1	Thale cress	cytosol	74.14	52.23
PGSC0003DMT400027406	Potato	cytosol	17.64	38.58
GSMUA_Achr4P01530_001	Banana	plasma membrane	38.18	36.5
KRH30135	Soybean	cytosol	52.05	36.28
KRG98177	Soybean	cytosol	51.88	36.03
Solyc01g014230.2.1	Tomato	cytosol	48.63	35.02
VIT_07s0129g00590.t01	Wine grape	cytosol	50.68	34.91
KRH72794	Soybean	plasma membrane	48.29	34.69
GSMUA_Achr9P12570_001	Banana	cytosol	17.81	34.67
Solyc12g100000.1.1	Tomato	cytosol, plastid	48.29	34.43
PGSC0003DMT400046295	Potato	cytosol	47.6	33.86
Bra037117.1-P	Field mustard	cytosol, plastid	42.12	33.52
KRH17146	Soybean	cytosol	13.36	32.77
TraesCS3D01G527900.1	Wheat	cytosol	44.18	31.05
Bra012155.1-P	Field mustard	cytosol	34.93	30.96
TraesCS3A01G521300.1	Wheat	cytosol	44.01	30.93
TraesCS3B01G591000.1	Wheat	cytosol	43.84	30.81
HORVU3Hr1G113910.3	Barley	cytosol	44.01	30.67
Os08t0110500-01	Rice	plasma membrane	42.64	30.22
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	12.84	29.53
TraesCS3A01G390200.1	Wheat	cytosol	21.4	28.47
TraesCS3B01G422200.1	Wheat	cytosol	21.4	28.28
Zm00001d035040_P007	Maize	mitochondrion	42.12	28.21
TraesCS3D01G382500.1	Wheat	cytosol	21.23	28.05
HORVU3Hr1G081380.1	Barley	cytosol	21.06	27.83
EES01872	Sorghum	cytosol	37.67	27.33
Zm00001d049708_P007	Maize	cytosol	41.27	27.32
Os01t0884400-01	Rice	plasma membrane	38.87	27.09
Bra007097.1-P	Field mustard	cytosol	31.85	26.5
Bra014787.1-P	Field mustard	cytosol	33.39	26.42
Bra007105.1-P	Field mustard	cytosol	27.57	25.39
TraesCS3B01G443500.1	Wheat	cytosol	22.77	25.14
EES14396	Sorghum	cytosol	43.32	25.12
TraesCS3A01G410100.1	Wheat	cytosol	22.43	24.76
Bra040513.1-P	Field mustard	cytosol	11.13	24.71
Bra033820.1-P	Field mustard	cytosol	27.57	24.47
Bra018212.1-P	Field mustard	cytosol	27.23	24.42
Bra001006.1-P	Field mustard	plastid	14.73	24.29
Bra012355.1-P	Field mustard	plasma membrane	24.32	24.15
Bra024559.1-P	Field mustard	cytosol, plasma membrane	25.0	23.97
Bra020360.1-P	Field mustard	cytosol	14.38	23.8
Zm00001d042608_P002	Maize	cytosol	37.5	23.68
Bra001247.1-P	Field mustard	cytosol	18.32	23.46
Bra029642.1-P	Field mustard	cytosol	18.15	22.94
Bra016165.1-P	Field mustard	cytosol, plasma membrane	24.14	22.89
Bra027977.1-P	Field mustard	cytosol	25.17	22.55
Bra035665.1-P	Field mustard	cytosol	25.17	22.55
Bra040374.1-P	Field mustard	cytosol	17.29	22.39
Bra038470.1-P	Field mustard	plastid	16.61	20.73
Bra012713.1-P	Field mustard	cytosol	16.1	20.66
TraesCS3A01G410000.1	Wheat	cytosol	22.26	20.5
Bra001998.1-P	Field mustard	cytosol	20.89	20.44
Bra006451.1-P	Field mustard	cytosol	15.75	19.7
Bra021899.1-P	Field mustard	plastid	21.92	19.36
Bra019022.1-P	Field mustard	cytosol	22.26	19.29
Bra032309.1-P	Field mustard	plastid	23.12	19.18
Bra010834.1-P	Field mustard	mitochondrion	23.46	19.05
Bra019924.1-P	Field mustard	mitochondrion	19.52	16.4
Bra031521.1-P	Field mustard	cytosol	18.84	16.25
Bra002153.1-P	Field mustard	cytosol	16.95	7.25
Bra006452.1-P	Field mustard	cytosol	15.07	5.3

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra032180	EnsemblPlants:Bra032180.1	EnsemblPlants:Bra032180.1-P	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0016043	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0034614	GO:GO:0048658	GO:GO:0061630	GO:GO:1904821
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4ETP8	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF7	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00025445CA	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT2G23140 (E=1e-084) | binding / ubiquitin-protein ligase

Coordinates

chrA04:-:10267383..10269553

Molecular Weight (calculated)

65206.0 Da

IEP (calculated)

4.871

GRAVY (calculated)

-0.316

Length

584 amino acids

Sequence
(BLAST)

001: MEISALVDSI SSFLNLSSSR HIDLDPFDKY YKRLEELLRV LKPIADAALL NSDLALEERL CKSFQELTQD VDHSRDLFTS WHPFSSKVYF VLQIESLIPK
101: MRDTIVDTFQ FLQSLKHDIP DELSPASLEK CLEKIKHLSY EEISSVIDVA LERQKENAEQ SENNAEVEFL DQLIVIVNQM HERLLLTKQT QTSSVSILAD
201: FFCPLSLEVM NDPVIVSSGQ TYEKAFIKRW IDLGLKVCPK TRQTLTHTTL IPNYTVKALI SNWCDTNDVN LPDPNQSSSL NELNPLLSCT YSIHASPSRS
301: NDSPEMNTDE NHHHHLRSPS ASISSVSNEE FPRTDGNENS EESPHATTPY SSDASGEIRS GPLAATTTSS AAPPWRDLSP RFMDRRNNRG SQFWRRPSKI
401: ISAPSNSARR DLAEVESQVK KLLEELKSSS LDVERRATAE IRLLAKHNMD NRIVIGNSGA IVSLVELLRS TDSATQENAV TALLNLSIID NNKSLIAEAG
501: AIEPLIHVLE NGSSEAKENS AATLFSLSVI EENKIKIGQS GAIGPLYGFV LTFLEDVVTC LGTGIAQLLQ EPKAWKCWAR LMEE

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.