Factsheet for Zm00001d042608_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01872	Sorghum	cytosol	78.92	90.68
KRH17146	Soybean	cytosol	17.62	68.49
GSMUA_Achr9P12570_001	Banana	cytosol	21.51	66.33
Os01t0884400-01	Rice	plasma membrane	54.7	60.38
GSMUA_Achr4P01530_001	Banana	plasma membrane	38.81	58.76
Solyc01g014230.2.1	Tomato	cytosol	40.11	45.75
CDX76873	Canola	cytosol, plastid	36.86	45.65
VIT_07s0129g00590.t01	Wine grape	cytosol	41.41	45.17
Solyc12g100000.1.1	Tomato	cytosol, plastid	39.89	45.05
PGSC0003DMT400046295	Potato	cytosol	39.68	44.7
Zm00001d035040_P007	Maize	mitochondrion	41.73	44.27
KRG98177	Soybean	cytosol	39.68	43.64
KRH30135	Soybean	cytosol	39.46	43.56
CDY18649	Canola	cytosol, plastid	33.41	43.4
AT2G23140.1	Thale cress	cytosol	38.59	43.06
CDX81323	Canola	cytosol, plastid	33.62	43.02
AT5G67340.1	Thale cress	cytosol	32.65	42.72
KRH72794	Soybean	plasma membrane	37.51	42.68
Bra037117.1-P	Field mustard	cytosol, plastid	33.73	42.51
Zm00001d049708_P007	Maize	cytosol	40.11	42.06
Zm00001d021978_P001	Maize	cytosol	16.22	41.44
Zm00001d006726_P001	Maize	cytosol	15.89	40.83
Bra012155.1-P	Field mustard	cytosol	27.78	39.0
CDY57440	Canola	cytosol	27.78	39.0
CDY12838	Canola	cytosol	29.08	38.48
Bra032180.1-P	Field mustard	cytosol	23.68	37.5
CDY38931	Canola	cytosol	24.54	36.91
PGSC0003DMT400027406	Potato	cytosol	10.49	36.33
Zm00001d006705_P001	Maize	plastid	17.62	35.13
Zm00001d021951_P001	Maize	plastid	17.41	34.62
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	37.73	33.79
Zm00001d045632_P004	Maize	cytosol, mitochondrion	22.92	33.65
Zm00001d016501_P001	Maize	cytosol	15.68	31.18
Zm00001d030732_P001	Maize	cytosol	21.62	30.08
Zm00001d031263_P001	Maize	cytosol	20.65	29.61
Zm00001d041548_P002	Maize	cytosol	21.41	29.46
Zm00001d014845_P001	Maize	cytosol	20.11	29.02
Zm00001d003967_P001	Maize	plastid	13.84	28.44
Zm00001d000381_P001	Maize	cytosol	19.57	28.37
Zm00001d028623_P001	Maize	cytosol	22.05	28.1
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	16.43	22.69
Zm00001d012494_P001	Maize	cytosol	16.22	22.62
Zm00001d043043_P001	Maize	cytosol	16.11	22.47
Zm00001d016225_P001	Maize	plastid	17.51	22.22
Zm00001d053544_P001	Maize	mitochondrion, plastid	16.86	22.13
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	16.11	21.47
Zm00001d020332_P001	Maize	cytosol	15.57	20.63

Protein Annotations

Gene3D:1.10.560.10	Gene3D:1.25.10.10	EntrezGene:103650913	Gene3D:3.30.260.10	Gene3D:3.30.40.10	Gene3D:3.50.7.10
MapMan:35.1	UniProt:A0A1D6N5E0	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	ProteinID:ONM35848.1
PFAM:PF00118	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF52029	SUPFAM:SSF54849
SUPFAM:SSF57850	InterPro:TCP-1-like_intermed_sf	UniParc:UPI000844D149	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d042608	EnsemblPlants:Zm00001d042608_P002
EnsemblPlants:Zm00001d042608_T002	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

U-box domain-containing protein 4

Coordinates

chr3:-:173419423..173424858

Molecular Weight (calculated)

101304.0 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.233

Length

925 amino acids

Sequence
(BLAST)

001: MERLVLACGG EAVNSVDDLT ERCLGWAGLV YDHVLGEEKY TFVENVKNPH SCTILIKGPN DHTIAQTKDA VRDGLRSVKN TIEDGAAVLG GWELDLVRKV
101: RKPRTRARTA RSEVGIGSSS RCFRSMEESV PMSVISSISN FRTLSTSSVV ETELVKRYCR KINEILGLLK LVLDEVIPQI SLDDRMLEGL AATINDAIKL
201: VGSWDLMMSK IYFVMLVESL ITKMQNYVLE VCQVVNSEVT PPETNRISVY LEKIKQFQCD KIMGIIKEAS RDIAGKFTPK SETLTKIQVS LSLSTNQELL
301: MEAVALAKIR TRVDAEDSSE LDGINHISEL VNHMLEKHVE EKQMHSINGV PIPADFCCPL SLELMSDPVI VASGQTYERV FIRKWLDLGY NVCPKTRQTL
401: GHSNLIPNYT VKQLIENWSE VHGVVLPDPV KLLSLNFSVS LKPINGRTSD KSPFSENSSR ENKFGSPDHI SSDDSCHPNL LHENFDSDDQ ISKASSSEDT
501: DDSETGPPKL LVASTEANKL MCNASIDGSD AIKQSRKDGF HASDVEPRLQ RNSISGDIGT SASSSSNHLE VVEKDKEEQV SSNSIASETT RNGRTVTCSK
601: PNFQPRLGGV RSRNHLVWQQ RSDKAVSLDS RSDFAIVDNK VRKLIEDLKN ERTDPERAAI GELLVLSRHN MESRISIANH GAIPFLVNLL YSADPSMQEN
701: AVTVILNLSL DDNNKITIAS ADAIKPLIHV LETGNPEARA NSAATLFSLS VNEENKAKIG RSGAIKPLVD LLRDGSAQGK KDAATALFNL SIFHENKARV
801: VEAGAVKPLV ELMDPAAGMV DKAVAVLAIL ATVQEGRNGI AQAGGIPVLV EVVELGSARA KENAAAALLQ LCTNNSRFCS LVLQEGAMPP LVALSQSGTA
901: RAREKAQVLL SYFRNQRQVG KVTRR

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.