Factsheet for GSMUA_Achr4P01530_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P12570_001	Banana	cytosol	38.63	78.67
KRH17146	Soybean	cytosol	30.28	77.73
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	32.24	77.56
TraesCS3B01G422200.1	Wheat	cytosol	39.61	54.75
HORVU3Hr1G081380.1	Barley	cytosol	39.28	54.3
TraesCS3A01G390200.1	Wheat	cytosol	38.79	53.99
TraesCS3D01G382500.1	Wheat	cytosol	38.63	53.39
GSMUA_Achr4P03430_001	Banana	cytosol	21.77	49.44
Os08t0110500-01	Rice	plasma membrane	65.79	48.79
Solyc01g014230.2.1	Tomato	cytosol	64.32	48.46
CDX76873	Canola	cytosol, plastid	59.08	48.33
TraesCS3D01G527900.1	Wheat	cytosol	65.3	48.01
TraesCS3B01G591000.1	Wheat	cytosol	65.3	48.01
TraesCS3A01G521300.1	Wheat	cytosol	64.98	47.77
VIT_07s0129g00590.t01	Wine grape	cytosol	66.28	47.76
HORVU3Hr1G113910.3	Barley	cytosol	65.3	47.61
KRH72794	Soybean	plasma membrane	63.18	47.48
PGSC0003DMT400046295	Potato	cytosol	63.67	47.38
Solyc12g100000.1.1	Tomato	cytosol, plastid	63.5	47.37
GSMUA_Achr6P36530_001	Banana	cytosol	50.41	46.67
KRH30135	Soybean	cytosol	63.83	46.54
KRG98177	Soybean	cytosol	63.83	46.37
EES01872	Sorghum	cytosol	60.39	45.84
Zm00001d035040_P007	Maize	mitochondrion	64.98	45.53
CDY18649	Canola	cytosol, plastid	53.03	45.51
CDX81323	Canola	cytosol, plastid	53.52	45.23
AT2G23140.1	Thale cress	cytosol	61.21	45.11
Os01t0884400-01	Rice	plasma membrane	61.87	45.11
GSMUA_Achr6P07710_001	Banana	cytosol	26.19	44.82
Bra037117.1-P	Field mustard	cytosol, plastid	53.36	44.41
AT5G67340.1	Thale cress	cytosol	51.39	44.41
GSMUA_Achr10P...	Banana	cytosol	26.35	43.28
GSMUA_Achr3P18890_001	Banana	cytosol	25.37	43.18
Zm00001d049708_P007	Maize	cytosol	61.87	42.86
GSMUA_Achr5P21360_001	Banana	cytosol	52.37	42.16
CDY57440	Canola	cytosol	44.84	41.58
Bra012155.1-P	Field mustard	cytosol	44.68	41.43
TraesCS3B01G443500.1	Wheat	cytosol	35.52	41.02
CDY12838	Canola	cytosol	46.48	40.63
TraesCS3A01G410100.1	Wheat	cytosol	35.02	40.45
EES14396	Sorghum	cytosol	65.63	39.82
GSMUA_Achr4P14130_001	Banana	cytosol	22.26	39.19
Zm00001d042608_P002	Maize	cytosol	58.76	38.81
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	25.7	38.67
TraesCS3A01G410000.1	Wheat	cytosol	39.93	38.49
Bra032180.1-P	Field mustard	cytosol	36.5	38.18
GSMUA_Achr4P06990_001	Banana	plastid	25.04	37.97
CDY38931	Canola	cytosol	37.97	37.72
GSMUA_Achr4P11070_001	Banana	cytosol	25.53	36.97
GSMUA_Achr3P29830_001	Banana	cytosol	24.71	36.3
PGSC0003DMT400027406	Potato	cytosol	15.71	35.96
GSMUA_Achr6P06560_001	Banana	cytosol	21.93	35.92
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	24.22	35.75
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	59.9	35.43
GSMUA_Achr10P...	Banana	cytosol	21.28	34.76
GSMUA_Achr1P22790_001	Banana	mitochondrion	25.37	34.22
GSMUA_Achr8P25140_001	Banana	plastid	23.08	33.57
GSMUA_Achr5P16030_001	Banana	cytosol	24.88	32.27
GSMUA_Achr9P01670_001	Banana	cytosol	24.55	32.19
GSMUA_Achr3P00280_001	Banana	cytosol	31.59	32.01
GSMUA_Achr10P...	Banana	cytosol	32.08	31.31
GSMUA_Achr1P24290_001	Banana	cytosol	31.1	31.1
GSMUA_Achr5P28670_001	Banana	cytosol	27.66	29.65
GSMUA_Achr6P34170_001	Banana	cytosol	31.42	28.92
GSMUA_Achr4P05030_001	Banana	cytosol	24.22	28.24
GSMUA_Achr4P04900_001	Banana	cytosol	24.22	28.03
GSMUA_Achr5P07140_001	Banana	cytosol	27.0	26.27
GSMUA_Achr9P15600_001	Banana	cytosol	27.82	25.15
GSMUA_Achr2P15530_001	Banana	mitochondrion	26.51	24.55
GSMUA_Achr7P22130_001	Banana	cytosol	24.88	24.01
GSMUA_Achr4P00200_001	Banana	plastid	27.33	23.72
GSMUA_Achr9P28820_001	Banana	mitochondrion	22.09	22.54
GSMUA_Achr10P...	Banana	cytosol	31.59	22.34
GSMUA_Achr9P14560_001	Banana	cytosol	21.11	22.05
GSMUA_Achr7P09440_001	Banana	mitochondrion	22.91	21.94
GSMUA_Achr3P06160_001	Banana	plastid	19.31	20.81
GSMUA_Achr10P...	Banana	mitochondrion	15.38	20.8

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr4G01530_001	EnsemblPlants:GSMUA_Achr4P01530_001	EnsemblPlants:GSMUA_Achr4T01530_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0SK70	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
SignalP:SignalP-noTM	UniParc:UPI00029589D8	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:

Description

Putative U-box domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G01530_001]

Coordinates

chr4:-:1265636..1274901

Molecular Weight (calculated)

67060.3 Da

IEP (calculated)

6.211

GRAVY (calculated)

-0.016

Length

611 amino acids

Sequence
(BLAST)

001: MEIFLLKVLL DSIAQFSLVS SNNNVKPELV QRYCQKIDQI IEQFEPVCNE IAASKITLDE QLVKVLKELD SAVNEARELV LSWFPMTSKI YFVLQIETTV
101: TKIYSSTLEI CQLVESLLLT PVASTALKSI EHMDEEPISV VIEKAIRDQT EKDIPRPEHL DMISNFLSLS SNQELLMEAV ALEKLKLKIG CNVTQAELEN
201: IDHIIALITY MHDCLVKSKQ LQSINGVSIP ADFCCPLSLE LMSDPVIVAS GQTYERAFIR KWLDQGFNVC PRTRQTLGHT NLIPNYTVKA LIANWCESNN
301: IKLPDPMKSI MTTSQRDAHS SNGVETQVRK LIEDLKSDSG DMQRTATEEL RLLAKHSMEN RIVIANCGAI SLLVGLLRST DTKTQEHAVT ALLNLSLNDN
401: NKIAIGNADS IDPLIHVLET GNPEAKENSA ATLYSLSVIE ENKVRIGRSR AIGPLVELLA NGTPRGKKDA ATALFNLSIF HENKLRIVQA GAVRHLVELM
501: DPAAGMVDKA VAVLSNLATI PEGRTAIGQA GGIPVLVEVV ELGSARGKEN AAAALLHLCT NSGRFCSLVL QEGAVPPLVA LSQSGTPRAK EKAQALLSYF
601: RNQRHGNAGR R

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.