Factsheet for GSMUA_Achr10P22780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P07140_001	Banana	cytosol	56.02	77.07
GSMUA_Achr10P...	Banana	cytosol	51.27	70.77
GSMUA_Achr5P28670_001	Banana	cytosol	42.13	63.86
GSMUA_Achr6P34170_001	Banana	cytosol	46.53	60.54
TraesCS4A01G097700.1	Wheat	cytosol	49.31	59.58
VIT_06s0004g04530.t01	Wine grape	cytosol	46.88	59.38
KRH29807	Soybean	cytosol	45.14	59.0
KRH24807	Soybean	cytosol	45.02	58.76
Solyc11g066040.1.1	Tomato	cytosol	44.68	58.22
Os03t0275900-01	Rice	cytosol	48.84	58.13
PGSC0003DMT400001049	Potato	cytosol	44.21	57.53
Zm00001d028623_P001	Maize	cytosol	48.26	57.44
Solyc06g076040.2.1	Tomato	cytosol	43.87	57.34
PGSC0003DMT400078166	Potato	cytosol	43.17	56.43
Bra018212.1-P	Field mustard	cytosol	42.36	56.22
OQU92820	Sorghum	cytosol	48.38	55.81
CDX86080	Canola	cytosol	42.36	55.79
CDX99112	Canola	cytosol	42.25	55.73
HORVU4Hr1G059610.2	Barley	cytosol	49.31	55.18
CDX68379	Canola	cytosol	42.01	55.17
AT3G46510.1	Thale cress	cytosol	42.13	55.15
Bra033820.1-P	Field mustard	cytosol	41.9	55.02
AT2G28830.1	Thale cress	endoplasmic reticulum	37.04	54.98
TraesCS4B01G206900.1	Wheat	plastid	48.73	54.96
CDX68380	Canola	cytosol	33.68	54.7
TraesCS4D01G207700.2	Wheat	plastid	49.19	54.7
CDY31736	Canola	cytosol	39.81	53.58
CDX77213	Canola	cytosol	39.7	53.34
Bra035665.1-P	Field mustard	cytosol	40.05	53.07
GSMUA_Achr3P00280_001	Banana	cytosol	35.42	50.75
GSMUA_Achr1P24290_001	Banana	cytosol	33.33	47.14
KRG99865	Soybean	cytosol	29.28	41.0
GSMUA_Achr4P05030_001	Banana	cytosol	23.96	39.5
GSMUA_Achr4P04900_001	Banana	cytosol	23.5	38.45
GSMUA_Achr9P15600_001	Banana	cytosol	28.94	36.98
GSMUA_Achr9P12570_001	Banana	cytosol	12.73	36.67
GSMUA_Achr6P06560_001	Banana	cytosol	14.7	34.05
GSMUA_Achr8P25140_001	Banana	plastid	16.55	34.05
GSMUA_Achr4P03430_001	Banana	cytosol	10.19	32.71
GSMUA_Achr10P...	Banana	cytosol	14.0	32.35
GSMUA_Achr4P01530_001	Banana	plasma membrane	22.34	31.59
GSMUA_Achr9P01670_001	Banana	cytosol	16.67	30.9
GSMUA_Achr6P36530_001	Banana	cytosol	22.45	29.39
GSMUA_Achr2P15530_001	Banana	mitochondrion	22.34	29.24
GSMUA_Achr6P07710_001	Banana	cytosol	11.81	28.57
GSMUA_Achr9P28820_001	Banana	mitochondrion	19.33	27.88
GSMUA_Achr10P...	Banana	mitochondrion	14.35	27.43
GSMUA_Achr3P18890_001	Banana	cytosol	11.34	27.3
GSMUA_Achr10P...	Banana	cytosol	11.57	26.88
GSMUA_Achr7P22130_001	Banana	cytosol	19.68	26.86
GSMUA_Achr7P09440_001	Banana	mitochondrion	19.79	26.8
GSMUA_Achr4P14130_001	Banana	cytosol	10.76	26.8
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	12.5	26.6
GSMUA_Achr4P00200_001	Banana	plastid	20.83	25.57
GSMUA_Achr5P21360_001	Banana	cytosol	22.22	25.3
GSMUA_Achr4P06990_001	Banana	plastid	11.57	24.81
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	11.34	23.67
GSMUA_Achr3P29830_001	Banana	cytosol	11.23	23.32
GSMUA_Achr4P11070_001	Banana	cytosol	11.23	22.99
GSMUA_Achr5P16030_001	Banana	cytosol	12.38	22.72
GSMUA_Achr9P14560_001	Banana	cytosol	15.05	22.22
GSMUA_Achr1P22790_001	Banana	mitochondrion	11.23	21.41
GSMUA_Achr3P06160_001	Banana	plastid	13.08	19.93

Protein Annotations

KEGG:00062+4.2.1.134	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	MapMan:5.1.6.1.3	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G22780_001
EnsemblPlants:GSMUA_Achr10P22780_001	EnsemblPlants:GSMUA_Achr10T22780_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M0RKK3	PFAM:PF00514	PFAM:PF04387	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF142	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
TMHMM:TMhelix	InterPro:Tyr_Pase-like_PTPLA	UniParc:UPI00029675F8	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 13 [Source:GMGC_GENE;Acc:GSMUA_Achr10G22780_001]

Coordinates

chr10:+:27821009..27830243

Molecular Weight (calculated)

96022.9 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.064

Length

864 amino acids

Sequence
(BLAST)

001: MDEGANEAAA PEVPTATGRV VDRLAEAVEE IAGISDYRNA YKKQFCNLSR RIKLLAPMFE ELKESNDPIS KPAVGVLEKL NRALDSAKDL LRLGSEGSKI
101: FLVLERDRIM EMFQVVTFQL EQALDKIPFD EIDISDEVKE QVELVHSQFK RAKERIDATD TELHTDLLSI YSMSADAKVD STILQSLAEK LQLMTISDLK
201: QESIALHEMV VSSGGDPGKI IEKMVMLLKK VKDFVQTQQS EMGTPTNPRV LPSHGTTKTP IIPDDFRCPI SLELMGDPVI VSTGQTYERG YIKKWLEAGH
301: NTCPKTQQKL SSTSLTPNYV LRSLIMRWCE ENGMEPPKRP AQTGKPPSDC SASEHAKVVD LLHKLSSQNL EDQRSAAGEL RLLAKRNADN RVCIAEAGAI
401: PVLVSLLVTH DIRTQEHAVT ALLNLSIFEE NKGKIIVSGA VPGIVHVLKR GSMEARENAA ATLFSLSVVD RNKGNKGKAV RAGVIQTLMG LLTDPEASMM
501: DEALAIMAIL SSHPEGKAAI TAAEALPVLI KVIRSGSPRN KENAAAVLVH LCNGEQQQQH LAELQEQGMM EPLFAMVESG TDRGKRKAAQ LLERMNRFLD
601: QQKEAHVQAK AQTRAWIQGL TPRLPFNLSS PSHLRLPMAG FLSTLRRIYL SLYNWTVFVG WFQVLYFAVK ALREGGPTTV YGFVERPLQL AQTAAVMEIL
701: HGLVVISFAV GLVRSPVSAT LPQIGSRLFL TWGILWSFPE TRAHILVSSL VISWSITEII RYSFFGMKEA FGFAPSWLLW LRYSTFLILY PTGITSEVGL
801: LYVALPYIKA SEKYCIRMPN KWNFSFDYFS ASILALAIYI PGIPHMYQYM LGQRRKALSK SKTA

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.