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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra018212.1-P Field mustard cytosol 97.71 98.31
CDX86080 Canola cytosol 97.56 97.41
CDX68379 Canola cytosol 92.82 92.4
CDX68380 Canola cytosol 73.13 90.04
AT3G46510.1 Thale cress cytosol 89.77 89.09
VIT_06s0004g04530.t01 Wine grape cytosol 70.99 68.18
KRH29807 Soybean cytosol 68.55 67.93
Solyc11g066040.1.1 Tomato cytosol 68.24 67.42
KRH24807 Soybean cytosol 68.09 67.37
PGSC0003DMT400001049 Potato cytosol 67.63 66.72
PGSC0003DMT400078166 Potato cytosol 65.8 65.2
Solyc06g076040.2.1 Tomato cytosol 65.04 64.45
CDY31736 Canola cytosol 59.54 60.75
CDX77213 Canola cytosol 59.24 60.34
Os12t0570000-01 Rice cytosol 44.27 56.09
GSMUA_Achr5P28670_001 Banana cytosol 46.56 53.51
OQU79384 Sorghum cytosol 54.2 53.3
Zm00001d030732_P001 Maize cytosol 53.89 53.08
GSMUA_Achr10P... Banana cytosol 50.69 53.04
Zm00001d041548_P002 Maize cytosol 53.89 52.53
GSMUA_Achr5P07140_001 Banana cytosol 49.62 51.75
HORVU5Hr1G021270.1 Barley cytosol 53.44 51.32
TraesCS5A01G078400.1 Wheat cytosol 53.59 51.32
TraesCS5B01G087500.1 Wheat cytosol 53.28 51.17
CDX78273 Canola cytosol 49.47 51.1
TraesCS5D01G093700.1 Wheat cytosol 53.13 50.88
HORVU5Hr1G021280.1 Barley cytosol 53.44 50.87
TraesCS4A01G097700.1 Wheat cytosol 55.27 50.63
Zm00001d028623_P001 Maize cytosol 55.88 50.41
GSMUA_Achr6P34170_001 Banana cytosol 50.84 50.15
Os03t0275900-01 Rice cytosol 54.05 48.76
OQU92820 Sorghum cytosol 54.81 47.93
TraesCS4B01G206900.1 Wheat plastid 55.11 47.13
HORVU4Hr1G059610.2 Barley cytosol 55.27 46.89
TraesCS4D01G207700.2 Wheat plastid 54.96 46.33
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 40.46 45.07
CDY12497 Canola cytosol 40.46 44.39
CDY21412 Canola cytosol, endoplasmic reticulum 40.92 44.08
CDY04746 Canola cytosol, endoplasmic reticulum 40.92 44.01
CDX96295 Canola cytosol, plasma membrane 40.0 42.53
GSMUA_Achr10P... Banana cytosol 55.73 42.25
CDX72769 Canola cytosol 39.08 41.83
CDY28679 Canola cytosol 16.34 40.68
CDY68037 Canola cytosol 39.85 39.85
CDX95193 Canola cytosol 39.85 39.85
CDY04747 Canola cytosol, golgi 26.56 39.46
CDX73439 Canola plastid 49.16 35.74
CDX91947 Canola plastid 18.32 33.99
CDX74050 Canola cytosol 23.36 33.55
CDY28059 Canola cytosol 23.66 33.55
CDX74298 Canola plastid 18.02 33.33
CDY71737 Canola cytosol 23.51 33.33
CDY32692 Canola peroxisome 17.71 32.86
CDY02828 Canola cytosol 17.71 32.77
CDY08002 Canola cytosol 22.75 32.75
CDY68352 Canola cytosol 22.44 32.24
CDY38506 Canola cytosol 21.83 31.36
CDX90186 Canola mitochondrion 33.89 31.14
CDY43332 Canola mitochondrion 33.59 30.6
CDX76873 Canola cytosol, plastid 34.81 30.52
CDX94661 Canola plastid 32.82 30.24
CDY18649 Canola cytosol, plastid 32.67 30.06
CDX81323 Canola cytosol, plastid 32.98 29.88
CDX99816 Canola plastid 32.37 29.28
CDY48332 Canola mitochondrion, plastid 31.14 28.98
CDX78262 Canola cytosol 30.84 28.77
CDX73449 Canola cytosol 30.69 28.55
CDY12838 Canola cytosol 30.23 28.33
CDY57440 Canola cytosol 28.09 27.92
CDY02891 Canola cytosol 31.3 27.82
CDY64696 Canola cytosol, extracellular, mitochondrion, plastid 31.14 27.64
CDX90518 Canola plastid 19.08 27.47
CDY09688 Canola cytosol 18.93 27.31
CDY37666 Canola cytosol, plastid 27.33 27.08
CDY38931 Canola cytosol 25.19 26.83
CDY43686 Canola plastid 27.02 26.78
CDX70810 Canola cytosol 19.24 26.69
CDY31406 Canola cytosol 26.87 26.11
CDX71307 Canola cytosol 26.72 26.0
CDY51235 Canola extracellular, golgi 18.93 23.89
CDY55050 Canola cytosol 25.34 23.85
CDX93411 Canola mitochondrion 25.34 23.78
CDY54132 Canola cytosol 24.12 23.24
CDY24520 Canola cytosol 23.82 23.15
CDY46092 Canola endoplasmic reticulum, golgi, plasma membrane, plastid 34.66 21.97
CDY04344 Canola cytosol 9.77 20.06
CDY04342 Canola cytosol 9.92 19.52
CDX70805 Canola cytosol 20.61 8.76
CDY51234 Canola cytosol 20.31 8.03
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10GO:A0A078EDL0InterPro:ARM-likeInterPro:ARM-type_fold
InterPro:ArmadilloEnsemblPlants:CDX99112ProteinID:CDX99112ProteinID:CDX99112.1GO:GO:0003674GO:GO:0003824
GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00107264001InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514PFAM:PF04564PFscan:PS50176
PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF235SMART:SM00185SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EEBBAEInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
BnaA06g18030D
Coordinates
chrLK031908:+:415980..418619
Molecular Weight (calculated)
70962.0 Da
IEP (calculated)
4.931
GRAVY (calculated)
-0.190
Length
655 amino acids
Sequence
(BLAST)
001: MEEEKGAVAQ SLIDVVTEIA SVSDYRITVK KLCSNLARRL KLLVPMLEEI RESNDPISEE TLGTLVSLKE ALSSAKDHLK FCSGGSKIYL VMEREQVTSK
101: LLEVSVQLEQ SLSKIPYEDL DISDEVKEQV ELVLSQFRRA KGRIDASDDE LYQDLHSLCI KSSDVDDHQP ALQRVANKLQ LMEIPDLAQE SVALHKMVAL
201: SGGENVEEMA MVLKLIKDFV QMETTDNSED HKVSNGQTST AASQKIPAVI PDDFRCPISL EMMRDPVIVS TGQTYERTCI DKWIEAGHST CPKTQQALTS
301: TTLTPNYVLR SLIAQWCEAN DIEPPKPPSS FKPSKVSSFS SPAEANKIED LMWRLAYGNP EDQRSAAGEI RLLAKRNADN RVAIAEAGAI PLLVGLLATP
401: DSRIQEHSVT ALLNLSICEN NKGAIVSAGA IPGIVLVLKK GSMEARENAA ATLFSLSVID ENKVTIGALG AIPPLVVLLN EGTHRGKKDA ATALFNLCIY
501: QGNKGKAIRA GVIPTLTRLL TEPGSGMVDE ALAILAILAS HPEGKSIIGS LDAVPSLVEF IRTGSPRNRE NAAAVLVHLS SNDPQHLVEA QKLGLMGPLI
601: DLAGNGTDRG KRKAAQLLER ISRLAEQQKE TAAHEQTKEE AEPTDSASTT EAADP
Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)
001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT
Arabidopsis Description
PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.