Factsheet for TraesCS4D01G207700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G097700.1	Wheat	cytosol	90.35	98.18
TraesCS4B01G206900.1	Wheat	plastid	96.14	97.52
HORVU4Hr1G059610.2	Barley	cytosol	90.99	91.58
Os03t0275900-01	Rice	cytosol	75.03	80.3
Zm00001d028623_P001	Maize	cytosol	72.59	77.69
OQU92820	Sorghum	cytosol	72.72	75.43
GSMUA_Achr10P...	Banana	cytosol	52.38	65.02
VIT_06s0004g04530.t01	Wine grape	cytosol	54.18	61.73
GSMUA_Achr5P07140_001	Banana	cytosol	49.81	61.62
Solyc11g066040.1.1	Tomato	cytosol	52.51	61.54
KRH29807	Soybean	cytosol	52.25	61.42
KRH24807	Soybean	cytosol	51.99	61.03
PGSC0003DMT400001049	Potato	cytosol	51.99	60.84
PGSC0003DMT400078166	Potato	cytosol	50.45	59.3
GSMUA_Achr5P28670_001	Banana	cytosol	43.24	58.95
Solyc06g076040.2.1	Tomato	cytosol	50.06	58.85
AT2G28830.1	Thale cress	endoplasmic reticulum	43.76	58.42
TraesCS5D01G093700.1	Wheat	cytosol	50.45	57.31
CDX77213	Canola	cytosol	46.2	55.83
CDY31736	Canola	cytosol	46.07	55.76
AT3G46510.1	Thale cress	cytosol	47.36	55.76
Bra035665.1-P	Field mustard	cytosol	46.72	55.67
Bra018212.1-P	Field mustard	cytosol	46.46	55.45
CDX86080	Canola	cytosol	46.59	55.18
CDX99112	Canola	cytosol	46.33	54.96
CDX68379	Canola	cytosol	46.46	54.86
Bra033820.1-P	Field mustard	cytosol	46.46	54.86
CDX68380	Canola	cytosol	36.81	53.76
TraesCS7D01G001600.2	Wheat	cytosol, plastid	39.25	50.66
GSMUA_Achr10P...	Banana	cytosol	54.7	49.19
KRG99865	Soybean	cytosol	36.68	46.19
TraesCS7D01G289800.1	Wheat	cytosol	33.08	39.91
TraesCS6D01G274500.1	Wheat	cytosol	32.82	39.78
TraesCS7D01G536300.1	Wheat	cytosol	32.05	38.6
TraesCS2D01G275400.1	Wheat	nucleus	20.08	33.91
TraesCS2D01G194400.1	Wheat	cytosol	15.44	33.24
TraesCS3D01G382500.1	Wheat	cytosol	17.25	30.32
TraesCS1D01G299400.1	Wheat	cytosol, plastid	25.61	29.84
TraesCS2D01G197200.1	Wheat	plastid	16.99	28.76
TraesCS3D01G339600.1	Wheat	plastid	25.23	28.45
TraesCS6D01G180400.1	Wheat	plastid	25.35	27.17
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	22.91	25.83
TraesCS3D01G527900.1	Wheat	cytosol	26.9	25.15
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	22.14	24.54

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:Neurochondrin	PFAM:PF00514
PFAM:PF04564	PFAM:PF05536	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF142
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4D01G207700	EnsemblPlants:TraesCS4D01G207700.2
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:356883760..356889620

Molecular Weight (calculated)

83029.0 Da

IEP (calculated)

5.240

GRAVY (calculated)

-0.235

Length

777 amino acids

Sequence
(BLAST)

001: MPAAPAVPIS ARGVRLTAGT GGSQGRAERS SRRPPPQIPF LCTSPVSPPL RPHDAAGGAA AMDEEAKPNT SEEASSKAAP AAAAAAAATA AEAATPPTPS
101: GSESPEGGKE EVGDLVERVA ELVDEIAVIS DFRNAYRRQF CNLSRRIRLL APMMEEVKEG PRPLPEASVA ALRQLRDALA GARELLRLGS NGSKIFLVLE
201: REKIMQTFQD ITSRLEQALA GISFDELGIS DEVREQVELV HAQFKRAKER PDTSDDILFN DLISAYNSST NDNVDPDIIQ RLSEKLQLVT ISDLNQESLA
301: LHEMASGGDP GAVVENMSML LKKIKDFVQT QDPIGIPAST TNPSRDDNLT SPVVPDDFRC PISLDLMKDP VIVSTGQTYE RGCIERWLEA GHGTCPKTQQ
401: KLPNKSLTPN YVLRSLIAQW CEANGVEPPK RPAQLNNTPA TCTASEHSKV IELLQKLSSQ NLADQCGAAG MLRQLAKRSA ENRACIGEAG AIPILVSLLP
501: TTDVSTQEHV VTALLNLSIY EENKARIITS GAVPGIVHVL KRGSMEAREN SAATLFSLSL VDENKVTIGA SGAIPALVLL LGNGSQRGKK DAATALFNLC
601: IYQGNKGKAV RAGLVPILLE LLTETESGMV DEALAILAIL SSHPEGKAAI SAAAAIPILV GVMRNGSSRN KENAAAVLVH LCNGEQQQQH LAEAQEQGIV
701: TLLEELAESG TDRGKRKAIQ LLERMNRFLK QQSQAQGDAM AQAHAQSQTL SQALVQVQAD TQLEESLPPT SSHLPER

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.