Factsheet for TraesCS7D01G536300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G549700.1	Wheat	cytosol	95.81	95.67
TraesCS7B01G473200.1	Wheat	cytosol	97.05	92.88
HORVU7Hr1G121810.1	Barley	cytosol	89.46	90.02
KXG20946	Sorghum	cytosol	77.21	77.45
Zm00001d014845_P001	Maize	cytosol	76.9	77.38
TraesCS7D01G289800.1	Wheat	cytosol	70.08	70.19
GSMUA_Achr4P05030_001	Banana	cytosol	49.92	61.45
GSMUA_Achr4P04900_001	Banana	cytosol	50.23	61.36
Os06t0726900-00	Rice	cytosol	34.11	57.89
VIT_03s0038g03660.t01	Wine grape	cytosol	54.26	54.6
KRH40395	Soybean	cytosol	53.49	54.33
KRH00831	Soybean	cytosol	52.87	53.7
PGSC0003DMT400025648	Potato	cytosol	52.87	52.54
Solyc04g082440.2.1	Tomato	cytosol	52.71	52.39
Solyc12g094610.1.1	Tomato	cytosol	42.33	50.84
Bra027977.1-P	Field mustard	cytosol	50.85	50.31
CDX95193	Canola	cytosol	51.01	50.23
CDY68037	Canola	cytosol	51.01	50.23
PGSC0003DMT400075612	Potato	cytosol	50.08	50.08
VIT_18s0001g14180.t01	Wine grape	cytosol	52.87	49.85
AT5G42340.1	Thale cress	cytosol	51.01	49.85
KRH33490	Soybean	cytosol	39.84	48.95
TraesCS7D01G001600.2	Wheat	cytosol, plastid	37.21	39.87
TraesCS5D01G093700.1	Wheat	cytosol	37.52	35.38
TraesCS6D01G274500.1	Wheat	cytosol	34.73	34.95
TraesCS4D01G207700.2	Wheat	plastid	38.6	32.05
TraesCS2D01G275400.1	Wheat	nucleus	21.24	29.78
TraesCS2D01G194400.1	Wheat	cytosol	15.81	28.25
TraesCS1D01G299400.1	Wheat	cytosol, plastid	26.36	25.49
TraesCS3D01G382500.1	Wheat	cytosol	17.36	25.34
TraesCS6D01G180400.1	Wheat	plastid	27.44	24.41
TraesCS3D01G339600.1	Wheat	plastid	25.74	24.09
TraesCS3D01G527900.1	Wheat	cytosol	30.85	23.95
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	24.81	22.82
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	24.34	22.79
TraesCS2D01G197200.1	Wheat	plastid	15.66	22.0

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7D01G536300	EnsemblPlants:TraesCS7D01G536300.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:+:628131575..628133814

Molecular Weight (calculated)

71385.7 Da

IEP (calculated)

6.449

GRAVY (calculated)

-0.228

Length

645 amino acids

Sequence
(BLAST)

001: MLSSMFGARP AGEPDPPEPE PEPSGRQHSD GDLLDELVAT VGAAQAFQEF RRSQRKECFN LLRWLQLVLP LIEELQDASP PRPLTDDAHR RLALLSRAFQ
101: AARRLLRCCH DGSKIFLSLE AEAVQGRFRA VYEKINQALD GMPYSEIGIS DEVKEQVELI NTQLKRSKKR TDTQDMELAM DFMVVLQDKE DRSADRVILE
201: RLAKKLELQS LADLRAETMA IKKLINERNG QQPESTKQII EILNKLKEVA GIDEKNILGE VHIPKYLEKC PSLMIPNDFL CPISLEIMTD PVIIASGRTY
301: ERRSIQKWLD AGQRTCPKTQ QPLAHLSLAP NFALKNLILQ WCEKNKVEMQ TRADEPPVEE VSKEVLIPSL VKDLSSPNLD VQRKAAKKIR TLSKESPEDR
401: TLIVDSDGIA ALVGLLLYPD KKIQDNAVTS LLNLSIDEAN KVLIAKGNAI PLIIEVLKNG NVEGQENSAA TLFSLSMVDE NKVAIGASGG MAPLVDLLKD
501: GTIRGKKDAS TAIFNLLLNH QNKLRAIEAG IVPVLLKILD NTKLGMVDEA LSIFLLLGSN SACRGTIGTE SFVETLVRII KEGTPKNKEC ALSVILELGS
601: HNNALMVHAL GFGLQEHLTE IAKNGTSRAQ RKANSLIQLA QKCQS

Best Arabidopsis Sequence Match ( AT5G42340.1 )
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Arabidopsis Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.