Factsheet for TraesCS1D01G299400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G300000.1	Wheat	cytosol	97.0	96.86
TraesCS1B01G310100.1	Wheat	plastid	97.3	96.29
HORVU1Hr1G069990.1	Barley	plastid	94.9	92.82
Os05t0476700-01	Rice	plastid	82.46	81.24
OQU78182	Sorghum	plastid	80.96	79.53
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	79.61	79.25
TraesCS3D01G339600.1	Wheat	plastid	77.06	74.6
GSMUA_Achr8P25140_001	Banana	plastid	35.08	55.71
GSMUA_Achr7P22130_001	Banana	cytosol	49.33	51.97
GSMUA_Achr4P00200_001	Banana	plastid	52.32	49.57
Bra001998.1-P	Field mustard	cytosol	38.83	43.38
Solyc09g018230.1.1	Tomato	plastid	44.38	43.02
PGSC0003DMT400071349	Potato	plastid	44.53	42.92
AT5G01830.1	Thale cress	plastid	43.18	42.73
VIT_08s0058g01100.t01	Wine grape	plastid	43.03	42.39
CDX71307	Canola	cytosol	41.83	41.46
Bra019022.1-P	Field mustard	cytosol	41.83	41.39
CDY31406	Canola	cytosol	41.68	41.25
KRH76105	Soybean	cytosol, plastid	42.73	40.6
KRH65448	Soybean	plastid	29.39	40.16
TraesCS6D01G180400.1	Wheat	plastid	35.68	32.83
TraesCS7D01G001600.2	Wheat	cytosol, plastid	26.54	29.4
TraesCS2D01G275400.1	Wheat	nucleus	20.24	29.35
TraesCS2D01G194400.1	Wheat	cytosol	15.14	27.98
TraesCS6D01G274500.1	Wheat	cytosol	26.09	27.15
TraesCS5D01G093700.1	Wheat	cytosol	27.59	26.9
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	27.44	26.56
TraesCS7D01G289800.1	Wheat	cytosol	25.49	26.4
TraesCS7D01G536300.1	Wheat	cytosol	25.49	26.36
TraesCS4D01G207700.2	Wheat	plastid	29.84	25.61
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	26.84	25.54
TraesCS2D01G197200.1	Wheat	plastid	17.09	24.84
TraesCS3D01G382500.1	Wheat	cytosol	15.29	23.08
TraesCS3D01G527900.1	Wheat	cytosol	25.04	20.1

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1D01G299400	EnsemblPlants:TraesCS1D01G299400.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:+:397285033..397287141

Molecular Weight (calculated)

70884.6 Da

IEP (calculated)

7.740

GRAVY (calculated)

0.080

Length

667 amino acids

Sequence
(BLAST)

001: MASTAEPSSS PYSASAPDVE ILRSLRRLAR DLAAADPPAP FLRAVFASVS RRARLLVAVF DDLLLLGAAV ALPRSASLCL REVLLVLQRF KAVVADCSAR
101: SRMRLLLQSD EVAARVRELQ HDLATLLDIL PVGELGLADD VADLLTLASR QCRRRAPEAA AEQELKASVL ALIQEVEREI VPERERLEAI LEEVAINDPA
201: SCSQEIEILE REIGDRLAER WTSAMIALVG LLRYAKCVLF SAATPRPLDS KVEADDDDTE PLAPPPDFRC PISLDLMRDP VVSASGQTYD RESITRWFGA
301: GKSTCPKTGQ VLTNLELVPN KALKNLISRW CRENGVAMEG SEPGKPEPAP PVAANKAAVE AARMTASFLV KKLSASFSPG SDNRVVHKIR LLAKSGSESR
401: AFIGEAGAVP LLVPLLNSED AALQLNSVTA LLNLSILDAN KKRIMHADGA VAALCEVMGS GATWRAKENA AATVLSLSAV HTYRRRLGRN PLVIEKVVLL
501: VRTGPPSTKK DALAALLCLS AERENVGKLV GAGAAEAALS AISEEETAAA VLASLAKRGG AEAIVNIDGA VAKLVAEMRR GTEWSRECAA AALVLLCRRA
601: GAAAASQVLA INGVEWAIWE LMGSGSERAR RKAASLGRTC RRWAAANAAQ NADCPTSTVS TATVAAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.