Factsheet for Bra019022.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001998.1-P	Field mustard	cytosol	88.43	99.83
CDY31406	Canola	cytosol	99.55	99.55
CDX71307	Canola	cytosol	98.81	98.96
AT5G01830.1	Thale cress	plastid	83.23	83.23
VIT_08s0058g01100.t01	Wine grape	plastid	58.01	57.75
Solyc09g018230.1.1	Tomato	plastid	56.68	55.52
PGSC0003DMT400071349	Potato	plastid	56.97	55.49
KRH76105	Soybean	cytosol, plastid	53.56	51.42
KRH65448	Soybean	plastid	36.5	50.41
GSMUA_Achr8P25140_001	Banana	plastid	31.01	49.76
Zm00001d012494_P001	Maize	cytosol	43.47	44.19
Zm00001d043043_P001	Maize	cytosol	42.58	43.29
TraesCS1A01G300000.1	Wheat	cytosol	42.43	42.81
OQU78182	Sorghum	plastid	42.88	42.56
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	42.28	42.54
TraesCS3A01G345800.1	Wheat	plastid	42.88	42.31
Os05t0476700-01	Rice	plastid	42.43	42.25
Os01t0823900-01	Rice	plastid	42.58	42.21
GSMUA_Achr7P22130_001	Banana	cytosol	39.61	42.18
HORVU3Hr1G081300.1	Barley	plastid	43.03	42.15
HORVU1Hr1G069990.1	Barley	plastid	42.58	42.08
TraesCS3B01G377600.1	Wheat	plastid	42.88	42.07
TraesCS3D01G339600.1	Wheat	plastid	42.88	41.94
GSMUA_Achr4P00200_001	Banana	plastid	43.77	41.9
TraesCS1B01G310100.1	Wheat	plastid	41.84	41.84
TraesCS1D01G299400.1	Wheat	cytosol, plastid	41.39	41.83
KXG33626	Sorghum	plastid	42.73	41.03
Bra010834.1-P	Field mustard	mitochondrion	36.94	34.63
Bra032309.1-P	Field mustard	plastid	35.76	34.23
Bra021899.1-P	Field mustard	plastid	31.01	31.62
Bra040513.1-P	Field mustard	cytosol	12.31	31.56
Bra007105.1-P	Field mustard	cytosol	26.85	28.55
Bra012355.1-P	Field mustard	plasma membrane	24.48	28.06
Bra035665.1-P	Field mustard	cytosol	26.85	27.76
Bra016165.1-P	Field mustard	cytosol, plasma membrane	25.22	27.6
Bra024559.1-P	Field mustard	cytosol, plasma membrane	24.93	27.59
Bra040374.1-P	Field mustard	cytosol	18.1	27.05
Bra001247.1-P	Field mustard	cytosol	18.25	26.97
Bra031521.1-P	Field mustard	cytosol	27.0	26.88
Bra018212.1-P	Field mustard	cytosol	25.96	26.88
Bra027977.1-P	Field mustard	cytosol	25.96	26.84
Bra033820.1-P	Field mustard	cytosol	25.96	26.6
Bra029642.1-P	Field mustard	cytosol	18.1	26.41
Bra020360.1-P	Field mustard	cytosol	12.46	23.8
Bra001006.1-P	Field mustard	plastid	12.31	23.45
Bra037117.1-P	Field mustard	cytosol, plastid	25.07	23.02
Bra019924.1-P	Field mustard	mitochondrion	23.29	22.59
Bra032180.1-P	Field mustard	cytosol	19.29	22.26
Bra012713.1-P	Field mustard	cytosol	14.69	21.76
Bra012155.1-P	Field mustard	cytosol	21.22	21.7
Bra014787.1-P	Field mustard	cytosol	23.59	21.54
Bra038470.1-P	Field mustard	plastid	14.84	21.37
Bra007097.1-P	Field mustard	cytosol	22.26	21.37
Bra006451.1-P	Field mustard	cytosol	14.69	21.2
Bra002153.1-P	Field mustard	cytosol	17.06	8.42
Bra006452.1-P	Field mustard	cytosol	15.28	6.2

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:Bra019022	EnsemblPlants:Bra019022.1
EnsemblPlants:Bra019022.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR013083	UniProt:M4DR79
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF63
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002540BA1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT5G01830 (E=4e-297) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA03:-:26711302..26713326

Molecular Weight (calculated)

74347.1 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.014

Length

674 amino acids

Sequence
(BLAST)

001: MAVTLEVTPT RKRRPLVVGH LDSPNISDTK LFRSLFFASQ ELSHMQPLRF ILRRNSQSII RKVKVLAAVF DELLRSHMVY SQSAQLCFEE MNIVMQRMKT
101: LIEDCTRSSK LWLLLQIENV SFSFHELVAD LSTVLDILPV NDFNLSEDAE DLILLLKKQC SDSIQFVDPR DDDLRRKVTD TIDGIKHQIV PDQSKLIGIF
201: NDLGLLDSAS LIEEIQRLED ETHDQIDERS RIAAASLIGL VRYANCVLYG PSTPSPHPDF RRHKSLSEAN IPADFRCPIT LELMRDPVVV SMGQTYDRES
301: IDLWIKSGHN TCPKTGQVLK HTNLIPNSAL KNLIVMWCRD QKIPFEIYGD GGVGSSTPCT EAVEFTRMMV SFLIDKLISV AEPNAVVFEL RALAKSDSVA
401: RACIAEAGAI PKLVRYLGSD SPSLQINAVT AILNLSILEQ NKTRIMETDG ALNGVIEVLR SGATWEAKAN AAATLFSLAS ISTYKRRLGR KVRVVSGLVD
501: LAKQGPTSSK RDAFVAILNL AAERENVGRF VEAGVVQAAG DAFRELPEEA VSVVEAIVRK GGLMAVSAAF GLIRQLGEMM REGGDTTKES AAATLVTMCR
601: KGGSELVAEM ATIPGIERVI WEMIGTGTAR GGRKAASLMR YLRRWAAGDT YETAATETQS IVVPTPSRIF NPVL

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.