Factsheet for Bra006451.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51235	Canola	extracellular, golgi	96.15	86.51
AT5G18320.1	Thale cress	cytosol	53.1	54.15
AT5G18340.1	Thale cress	nucleus	49.25	50.44
AT5G18330.1	Thale cress	cytosol	46.04	48.31
PGSC0003DMT400011486	Potato	cytosol	25.7	33.61
VIT_00s0524g00030.t01	Wine grape	cytosol	31.69	32.96
VIT_04s0043g00840.t01	Wine grape	cytosol	31.26	32.09
PGSC0003DMT400016998	Potato	cytosol	30.84	32.07
Solyc09g056450.2.1	Tomato	cytosol	30.84	32.07
Bra040374.1-P	Field mustard	cytosol	30.84	31.93
GSMUA_Achr6P06560_001	Banana	cytosol	25.48	31.9
GSMUA_Achr10P...	Banana	cytosol	25.48	31.82
Bra001247.1-P	Field mustard	cytosol	31.05	31.8
KRH68828	Soybean	cytosol	28.27	30.7
Solyc04g050780.1.1	Tomato	cytosol	28.27	30.63
PGSC0003DMT400039084	Potato	cytosol	28.91	30.47
KRG97080	Soybean	cytosol, nucleus	28.27	30.0
Solyc04g050770.1.1	Tomato	cytosol	28.05	29.57
KRG99581	Soybean	cytosol	29.12	29.5
KRH46608	Soybean	cytosol	29.12	29.5
Bra029642.1-P	Field mustard	cytosol	29.12	29.44
KRG92593	Soybean	cytosol	27.84	29.35
GSMUA_Achr9P01670_001	Banana	cytosol	29.12	29.18
Os02t0488600-01	Rice	cytosol, nucleus	26.12	28.84
TraesCS2D01G275400.1	Wheat	nucleus	27.84	28.26
TraesCS2A01G276400.1	Wheat	nucleus	27.62	28.04
TraesCS2B01G294100.1	Wheat	nucleus	27.62	28.04
HORVU2Hr1G067610.6	Barley	cytosol	28.05	27.64
Zm00001d016501_P001	Maize	cytosol	27.19	27.31
Os04t0348400-01	Rice	cytosol	26.34	26.8
EES06804	Sorghum	cytosol	26.55	26.72
Bra040513.1-P	Field mustard	cytosol	14.13	25.1
Bra006452.1-P	Field mustard	cytosol	81.37	22.88
Bra020360.1-P	Field mustard	cytosol	15.85	20.96
Bra001006.1-P	Field mustard	plastid	15.85	20.9
Bra012355.1-P	Field mustard	plasma membrane	25.48	20.24
Bra024559.1-P	Field mustard	cytosol, plasma membrane	25.05	19.21
Bra007105.1-P	Field mustard	cytosol	25.91	19.09
Bra018212.1-P	Field mustard	cytosol	26.55	19.05
Bra033820.1-P	Field mustard	cytosol	25.7	18.24
Bra035665.1-P	Field mustard	cytosol	25.05	17.94
Bra002153.1-P	Field mustard	cytosol	52.03	17.79
Bra016165.1-P	Field mustard	cytosol, plasma membrane	23.13	17.53
Bra027977.1-P	Field mustard	cytosol	23.55	16.87
Bra007097.1-P	Field mustard	cytosol	23.77	15.81
Bra032180.1-P	Field mustard	cytosol	19.7	15.75
Bra001998.1-P	Field mustard	cytosol	19.91	15.58
Bra038470.1-P	Field mustard	plastid	15.42	15.38
Bra012713.1-P	Field mustard	cytosol	14.99	15.38
Bra012155.1-P	Field mustard	cytosol	21.63	15.33
Bra014787.1-P	Field mustard	cytosol	23.98	15.18
Bra037117.1-P	Field mustard	cytosol, plastid	23.77	15.12
Bra021899.1-P	Field mustard	plastid	20.98	14.83
Bra019022.1-P	Field mustard	cytosol	21.2	14.69
Bra010834.1-P	Field mustard	mitochondrion	22.27	14.46
Bra032309.1-P	Field mustard	plastid	21.41	14.2
Bra019924.1-P	Field mustard	mitochondrion	20.77	13.96
Bra031521.1-P	Field mustard	cytosol	17.34	11.96

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra006451
EnsemblPlants:Bra006451.1	EnsemblPlants:Bra006451.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043531	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M4CQG2	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF75	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000253FE5F	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT5G18320 (E=2e-128) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA03:-:3547700..3549530

Molecular Weight (calculated)

51750.2 Da

IEP (calculated)

4.913

GRAVY (calculated)

-0.178

Length

467 amino acids

Sequence
(BLAST)

001: MEESTAANAA TLRMELKKTM TEILDDGGVS EDRGETDGAL VAVDEAVRIL NRLREVESKM PDSATSSSSP ASVLEVPKEF KCMLSRAIMS EPVVIASGQT
101: YEKRYIQQWL MYKVTCPKTK EVLSHRLWVP NHVIAELITE WCQVNKYDLP KPSDAPVGLF PDDIDLLLER ISSPSSVEDK TGAANELRRQ TKRFADVPAF
201: FVAEIPESIT RLLTPLSALG EDIDSNPGLQ KDIITALLYI SCLEENKTAV AQHPLAIPLL TKSLKQGIAK TRRNSAEALW ELSKLDSNKI LIGNSETLEA
301: LVHVIKEDHF TAAIGAAYAV FQLCCLPEKR DKVVSEGLVP ALINRIKERS FVYIYFALLS LMTTQKGVIE EMEDLGFVDD MCSILRNTSC SVTEENGVSI
401: VLLRMCGLST GDRDRERTRL KLIKEEEDKY STFTKFATQG SQRTVAEAEA VLQWIKKSGP SGTGAEP

Best Arabidopsis Sequence Match ( AT5G18320.1 )
(BLAST)

001: MADSTETNAD TLRRELQKVL TEILNDGGGN DRDETEAFSG VVKAIDEAVR ILTCLRKVES KIPESDISPV EVPKEFICTL SNTIMIEPVI IASGQTYEKR
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA

Arabidopsis Description

PUB46Putative U-box domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.