Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G18320.1 | Thale cress | cytosol | 64.25 | 63.97 |
| CDY38506 | Canola | cytosol | 59.43 | 59.43 |
| CDY68352 | Canola | cytosol | 58.33 | 58.33 |
| AT5G18330.1 | Thale cress | cytosol | 55.26 | 56.63 |
| CDX70810 | Canola | cytosol | 51.97 | 50.21 |
| Bra006451.1-P | Field mustard | cytosol | 50.44 | 49.25 |
| CDY51235 | Canola | extracellular, golgi | 50.22 | 44.12 |
| GSMUA_Achr10P... | Banana | cytosol | 29.39 | 35.83 |
| AT3G07360.1 | Thale cress | cytosol | 34.65 | 34.35 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 27.63 | 33.78 |
| Solyc09g056450.2.1 | Tomato | cytosol | 32.89 | 33.41 |
| PGSC0003DMT400016998 | Potato | cytosol | 32.89 | 33.41 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 33.33 | 33.41 |
| KRH68828 | Soybean | cytosol | 31.36 | 33.26 |
| KRH46608 | Soybean | cytosol | 33.33 | 32.97 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 32.46 | 32.96 |
| KRG99581 | Soybean | cytosol | 33.11 | 32.75 |
| PGSC0003DMT400011486 | Potato | cytosol | 25.44 | 32.49 |
| KRG97080 | Soybean | cytosol, nucleus | 30.92 | 32.05 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 32.24 | 31.55 |
| KRG92593 | Soybean | cytosol | 30.48 | 31.38 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 28.07 | 30.26 |
| Solyc04g050780.1.1 | Tomato | cytosol | 28.07 | 29.7 |
| PGSC0003DMT400039084 | Potato | cytosol | 28.51 | 29.35 |
| Zm00001d016501_P001 | Maize | cytosol | 29.39 | 28.82 |
| Solyc04g050770.1.1 | Tomato | cytosol | 27.85 | 28.67 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 28.73 | 28.48 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 28.73 | 28.48 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 28.51 | 28.26 |
| EES06804 | Sorghum | cytosol | 28.73 | 28.23 |
| Os04t0348400-01 | Rice | cytosol | 28.29 | 28.1 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 28.95 | 27.85 |
| AT1G23030.1 | Thale cress | cytosol | 27.85 | 20.75 |
| AT3G54850.1 | Thale cress | cytosol | 28.51 | 20.57 |
| AT3G46510.1 | Thale cress | cytosol | 29.61 | 20.45 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 26.1 | 20.45 |
| AT3G01400.1 | Thale cress | cytosol | 15.57 | 20.0 |
| Bra002153.1-P | Field mustard | cytosol | 57.89 | 19.33 |
| AT1G71020.1 | Thale cress | cytosol | 26.54 | 19.27 |
| AT5G42340.1 | Thale cress | cytosol | 26.97 | 18.64 |
| AT5G58680.1 | Thale cress | cytosol | 14.47 | 18.49 |
| AT5G01830.1 | Thale cress | plastid | 23.46 | 15.88 |
| AT5G67340.1 | Thale cress | cytosol | 24.56 | 15.84 |
| CDX70805 | Canola | cytosol | 52.63 | 15.57 |
| AT4G16490.1 | Thale cress | plastid | 16.01 | 15.47 |
| AT1G29340.1 | Thale cress | plastid | 24.34 | 15.23 |
| AT3G54790.1 | Thale cress | cytosol | 25.0 | 15.0 |
| AT2G23140.1 | Thale cress | cytosol | 26.32 | 14.48 |
| Bra006452.1-P | Field mustard | cytosol | 50.88 | 13.97 |
| CDY51234 | Canola | cytosol | 50.22 | 13.82 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 19.3 | 12.83 |
| AT1G10560.1 | Thale cress | cytosol | 19.52 | 12.77 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:831952 | EMBL:AC051626 | ProteinID:AED92541.1 |
| InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT5G18340 | EnsemblPlantsGene:AT5G18340 | RefSeq:AT5G18340 | TAIR:AT5G18340 |
| RefSeq:AT5G18340-TAIR-G | EnsemblPlants:AT5G18340.1 | TAIR:AT5G18340.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | RefSeq:NP_197335.1 |
| PFAM:PF04564 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0009025 |
| PO:PO:0009046 | PO:PO:0009047 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF8 | UniProt:Q3E9F5 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00001624C4 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PUB48U-box domain-containing protein 48 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9F5]
Coordinates
chr5:-:6070346..6072334
Molecular Weight (calculated)
50794.4 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.126
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSTADATE TNADTLTLRR ELKKVLTENL NDGGVKDRVE TVKSIDEAIR ILNRLKIVES KKRKRESDSS SVEVPKEFKC TLSKTIMIDP VIIFSGQTYE
101: KRYITEWLNH DLTCPTAKQV LYRVCLTPNH LINELITRWC LANKYDRPAP KPSDIDYVTE LFTDGIESLL QRISSPSSSV ADQTEAAKEL ALQTEKFVNV
201: RDFFIKELPD SITRLLTPLS VLGDEVDSNP ELQENIVTAL FNMSTFEKNK TVLAENHQVI PLLAKSMKQG SVVTRRNATL TLASLSDIDS NKIIIGNSVA
301: LKALIDLIGE LDDLSATHDA LCAVIDLCCD ERENWKKAIS LGLAPAAIKN IKARRNLFES LAALALISPH ERVIQEVANL GVIYDLLSIL RKTSCMVTCE
401: NAVVIVGNMY AKSRERSIKK ILAEEENQHK TFTKIATQGS VVAVMKAQGI LQCINY
101: KRYITEWLNH DLTCPTAKQV LYRVCLTPNH LINELITRWC LANKYDRPAP KPSDIDYVTE LFTDGIESLL QRISSPSSSV ADQTEAAKEL ALQTEKFVNV
201: RDFFIKELPD SITRLLTPLS VLGDEVDSNP ELQENIVTAL FNMSTFEKNK TVLAENHQVI PLLAKSMKQG SVVTRRNATL TLASLSDIDS NKIIIGNSVA
301: LKALIDLIGE LDDLSATHDA LCAVIDLCCD ERENWKKAIS LGLAPAAIKN IKARRNLFES LAALALISPH ERVIQEVANL GVIYDLLSIL RKTSCMVTCE
401: NAVVIVGNMY AKSRERSIKK ILAEEENQHK TFTKIATQGS VVAVMKAQGI LQCINY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.