Factsheet for Solyc09g056450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016998	Potato	cytosol	97.1	97.1
VIT_00s0524g00030.t01	Wine grape	cytosol	68.15	68.15
KRG99581	Soybean	cytosol	69.04	67.25
KRH46608	Soybean	cytosol	69.04	67.25
Bra040374.1-P	Field mustard	cytosol	60.13	59.87
AT3G07360.1	Thale cress	cytosol	61.02	59.57
CDY71737	Canola	cytosol	60.13	58.44
CDY28059	Canola	cytosol	60.13	58.44
CDX74050	Canola	cytosol	58.8	57.89
Bra029642.1-P	Field mustard	cytosol	59.47	57.79
Bra001247.1-P	Field mustard	cytosol	58.57	57.68
CDY08002	Canola	cytosol	58.35	57.58
GSMUA_Achr6P06560_001	Banana	cytosol	45.21	54.42
GSMUA_Achr10P...	Banana	cytosol	44.54	53.48
GSMUA_Achr9P01670_001	Banana	cytosol	51.89	50.0
Solyc04g050770.1.1	Tomato	cytosol	48.33	48.98
Solyc04g050780.1.1	Tomato	cytosol	46.55	48.49
Os02t0488600-01	Rice	cytosol, nucleus	44.54	47.28
EES06804	Sorghum	cytosol	46.99	45.47
Zm00001d016501_P001	Maize	cytosol	46.77	45.16
Os04t0348400-01	Rice	cytosol	42.54	41.61
TraesCS2D01G275400.1	Wheat	nucleus	41.87	40.87
TraesCS2B01G294100.1	Wheat	nucleus	41.87	40.87
TraesCS2A01G276400.1	Wheat	nucleus	41.87	40.87
HORVU2Hr1G067610.6	Barley	cytosol	41.65	39.45
CDY68352	Canola	cytosol	39.2	38.6
AT5G18320.1	Thale cress	cytosol	38.75	37.99
CDY38506	Canola	cytosol	38.31	37.72
Solyc12g088360.1.1	Tomato	cytosol	20.49	33.45
AT5G18330.1	Thale cress	cytosol	32.74	33.03
AT5G18340.1	Thale cress	nucleus	33.41	32.89
CDX70810	Canola	cytosol	33.41	31.78
Bra006451.1-P	Field mustard	cytosol	32.07	30.84
Solyc04g077850.2.1	Tomato	cytosol	24.05	30.34
CDY51235	Canola	extracellular, golgi	32.07	27.75
Solyc11g066040.1.1	Tomato	cytosol	39.42	26.7
Solyc06g076040.2.1	Tomato	cytosol	38.75	26.32
Solyc11g008390.1.1	Tomato	cytosol	36.53	26.28
Solyc05g008230.2.1	Tomato	cytosol	36.97	25.54
Solyc12g094610.1.1	Tomato	cytosol	30.51	25.51
Solyc04g007640.2.1	Tomato	cytosol	35.63	24.73
Solyc06g051090.1.1	Tomato	cytosol	29.84	23.84
Solyc11g012440.1.1	Tomato	cytosol, plastid	22.94	22.44
Solyc04g082440.2.1	Tomato	cytosol	31.18	21.57
Solyc04g014810.2.1	Tomato	plastid	21.6	21.51
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	32.96	20.44
Solyc09g025270.2.1	Tomato	cytosol	33.41	20.03
Solyc01g014230.2.1	Tomato	cytosol	34.3	18.99
Solyc12g100000.1.1	Tomato	cytosol, plastid	34.08	18.68
Solyc03g114160.1.1	Tomato	cytosol	28.29	18.62
Solyc09g018230.1.1	Tomato	plastid	27.39	17.88
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	27.17	17.81
Bra002153.1-P	Field mustard	cytosol	38.31	12.59
CDX70805	Canola	cytosol	33.41	9.73
CDY51234	Canola	cytosol	34.3	9.29
Bra006452.1-P	Field mustard	cytosol	34.3	9.27

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4CTD8	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF227	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g056450.2	EnsemblPlants:Solyc09g056450.2.1	UniParc:UPI000276B35A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4CTD8]

Coordinates

chr9:-:49222360..49224491

Molecular Weight (calculated)

49910.6 Da

IEP (calculated)

8.384

GRAVY (calculated)

-0.227

Length

449 amino acids

Sequence
(BLAST)

001: MAKTDVVEGD PLTVKEIELK RELQRLVKAI LSQEEINVDA IDKTQQILLD LKELKIKRSP SSLDLPFPDE FRCPLSKQLM TDPVMLASGQ TYDRPFIQKW
101: LKAGNRTCPQ TQQVLSHTIL TPNHLIRNMI SQWCKNNGIQ MPDSVQYLND EGLTEADRDL FLSLLEKMSS TLSDQKVAAR ELRLLTKKMP SFRSLFGESA
201: DAIPQLVRPL SQSNSNVNPN LQEDIITTLL NLSIHDNNKK LVAETPKVIP LLVEALRSGT IETRSNAAAA LFTLSALDSN KELIGKSGAL KPLVELLDEG
301: NPVAMKDVAS ALFSLCIIQD NKARAVRDGA VRAILKKIMS NVHVDELLAI LAMLSNNQKA VEEMGDLGAV TCLLNIIRET SCGRSKENCI AVLYTICYSD
401: RTKWKTLRDE EKTYGTISQL AQNGTARAKR KANGILDRLN RAINLTHTA

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.