Factsheet for Solyc12g094610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075612	Potato	cytosol	95.16	79.22
Solyc04g082440.2.1	Tomato	cytosol	72.07	59.63
KRH40395	Soybean	cytosol	58.1	49.13
KRH00831	Soybean	cytosol	57.36	48.5
CDX95193	Canola	cytosol	57.54	47.18
CDY68037	Canola	cytosol	57.17	46.87
Bra027977.1-P	Field mustard	cytosol	56.8	46.78
VIT_18s0001g14180.t01	Wine grape	cytosol	58.29	45.76
Os06t0726900-00	Rice	cytosol	32.22	45.53
AT5G42340.1	Thale cress	cytosol	55.49	45.15
KRH33490	Soybean	cytosol	43.2	44.19
GSMUA_Achr4P05030_001	Banana	cytosol	42.83	43.89
Os08t0481200-01	Rice	cytosol	51.4	42.99
TraesCS7D01G289800.1	Wheat	cytosol	51.21	42.7
GSMUA_Achr4P04900_001	Banana	cytosol	41.9	42.61
KXG20946	Sorghum	cytosol	51.02	42.61
TraesCS7A01G549700.1	Wheat	cytosol	51.21	42.57
Zm00001d014845_P001	Maize	cytosol	50.65	42.43
HORVU7Hr1G121810.1	Barley	cytosol	50.65	42.43
TraesCS7B01G186600.1	Wheat	cytosol	50.84	42.39
TraesCS7A01G293900.1	Wheat	cytosol	50.84	42.39
TraesCS7D01G536300.1	Wheat	cytosol	50.84	42.33
HORVU7Hr1G061800.2	Barley	cytosol	50.65	42.24
EES15482	Sorghum	cytosol	49.53	41.37
TraesCS7B01G473200.1	Wheat	cytosol	51.4	40.95
Zm00001d031263_P001	Maize	cytosol	48.79	40.62
Solyc11g066040.1.1	Tomato	cytosol	44.88	36.35
Solyc12g088360.1.1	Tomato	cytosol	18.44	36.0
Solyc11g008390.1.1	Tomato	cytosol	41.71	35.9
Solyc06g076040.2.1	Tomato	cytosol	43.58	35.4
Solyc05g008230.2.1	Tomato	cytosol	39.85	32.92
Solyc04g007640.2.1	Tomato	cytosol	39.66	32.92
Solyc09g056450.2.1	Tomato	cytosol	25.51	30.51
Solyc04g077850.2.1	Tomato	cytosol	19.74	29.78
Solyc04g050780.1.1	Tomato	cytosol	23.09	28.77
Solyc06g051090.1.1	Tomato	cytosol	29.42	28.11
Solyc04g050770.1.1	Tomato	cytosol	23.09	27.99
Solyc11g012440.1.1	Tomato	cytosol, plastid	21.42	25.05
Solyc04g014810.2.1	Tomato	plastid	20.86	24.83
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	32.59	24.17
Solyc09g025270.2.1	Tomato	cytosol	33.33	23.9
Solyc03g114160.1.1	Tomato	cytosol	29.61	23.31
Solyc01g014230.2.1	Tomato	cytosol	34.08	22.56
Solyc12g100000.1.1	Tomato	cytosol, plastid	33.89	22.22
Solyc09g018230.1.1	Tomato	plastid	28.12	21.95
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	27.93	21.9

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	UniProt:K4DH33	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc12g094610.1	EnsemblPlants:Solyc12g094610.1.1	UniParc:UPI000276989C
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4DH33]

Coordinates

chr12:+:64780504..64783539

Molecular Weight (calculated)

60422.7 Da

IEP (calculated)

5.256

GRAVY (calculated)

-0.348

Length

537 amino acids

Sequence
(BLAST)

001: MALDRDHELE DGVTVEEEFG SSCQTSPQDK REVVRKLIGV IHNVGSYEEY RRSQREECHI LSERLKLLLP LFEEIRDFEG QIPESGIECL MRLKKAFSSA
101: KKLLKTCHCG SKIYLAIESE AVMGRFCSVY ERLSQALENI PYDDLGISDE EKEQVELVRG QFRRFLCPIT LETMTDPVTV STGQTYEREN IQHLLDSGCQ
201: TCPKTGEILE HLSLAPNFAL KNLIQQWCEK NNFQLPRKQE SPKPESPSDE SDERVLSLIQ DLSSSHLEVQ RKAVKEIRML SKENPENRTL IVNRGGIPPL
301: VHLLSYPDSR IQEHAVTALL NLSIDETNKN LISKEEPILA IIEILQNGNV GAKENSAAAL FSLSMLDENK EAIGSLNGIP PLIELLKNGT IRGKKDAITA
401: LFNLCLNEQN VRLANEAGIV ASLFQLLEKK NSEMVDEALS LLLLLATHQD GRQEMGKLTF IETLVNLMRD GTPKNKECSV AVLHRLSIHN SNHLLAALQY
501: GVYEYLVEIG ESGTDRGQRK AKSILQHMSK TEQIPCL

Best Arabidopsis Sequence Match ( AT5G42340.1 )
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Arabidopsis Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.