Factsheet for Solyc09g025270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026700	Potato	cytosol	97.33	93.7
VIT_07s0005g03520.t01	Wine grape	cytosol	61.55	58.58
GSMUA_Achr6P36530_001	Banana	cytosol	46.33	52.58
Solyc12g088360.1.1	Tomato	cytosol	18.96	51.64
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.07	51.6
Bra014787.1-P	Field mustard	cytosol	48.06	48.78
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	48.06	48.78
Bra007097.1-P	Field mustard	cytosol	45.66	48.72
CDY02891	Canola	cytosol	47.93	48.71
CDX78262	Canola	cytosol	45.26	48.29
CDX73449	Canola	cytosol	45.26	48.15
GSMUA_Achr5P21360_001	Banana	cytosol	48.2	47.56
AT3G54790.1	Thale cress	cytosol	48.2	47.5
KRH67390	Soybean	cytosol, plastid	54.07	47.31
Solyc04g077850.2.1	Tomato	cytosol	21.63	45.51
KRH32190	Soybean	cytosol	39.39	44.49
Solyc01g014230.2.1	Tomato	cytosol	43.52	40.2
Solyc12g100000.1.1	Tomato	cytosol, plastid	41.66	38.1
Solyc11g008390.1.1	Tomato	cytosol	29.11	34.94
Solyc11g066040.1.1	Tomato	cytosol	30.04	33.94
Solyc09g056450.2.1	Tomato	cytosol	20.03	33.41
Solyc12g094610.1.1	Tomato	cytosol	23.9	33.33
Solyc11g012440.1.1	Tomato	cytosol, plastid	20.16	32.9
Solyc06g076040.2.1	Tomato	cytosol	28.84	32.68
Solyc04g014810.2.1	Tomato	plastid	19.23	31.93
Solyc06g051090.1.1	Tomato	cytosol	23.1	30.78
Solyc05g008230.2.1	Tomato	cytosol	26.57	30.62
Solyc04g082440.2.1	Tomato	cytosol	26.03	30.05
Solyc04g007640.2.1	Tomato	cytosol	25.9	29.98
Solyc04g050780.1.1	Tomato	cytosol	16.82	29.23
Solyc04g050770.1.1	Tomato	cytosol	16.96	28.67
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	24.03	24.86
Solyc09g018230.1.1	Tomato	plastid	20.83	22.67
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	20.43	22.34
Solyc03g114160.1.1	Tomato	cytosol	20.03	21.99

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4CSI8	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g025270.2	EnsemblPlants:Solyc09g025270.2.1	UniParc:UPI000276C500
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

U-box domain-containing protein 3 [Source:Projected from Arabidopsis thaliana (AT3G54790) UniProtKB/Swiss-Prot;Acc:Q8GWV5]

Coordinates

chr9:+:72441024..72446410

Molecular Weight (calculated)

82019.1 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.258

Length

749 amino acids

Sequence
(BLAST)

001: MPGQKNYKNI ATLLKLLKPV LDDVAQQKAP SDETICRQCE ELDVAINEAR ESLEEWSLKK SKILWVLQSE PELLKIQSIA LKLSHTLCEL LESSPPSLGP
101: SEIQPFIQEI QKFEVGQISK QMNMAPEVGK ILVSESLTEM IHSLNFVSHE ELLNECIALE KERMNAKDNE TRGDLDKISL SIDLFSDIRD CMLELDHFKA
201: IDGIKIPPYF RCPLSLELMV NPVIIASGQT YEKTSIQKWL DHGLTTCPRT NQALAHSNLI PNYTVKALIE NWCEVNKVRL NGNPESTHDG ITSNPVHLTD
301: MDDVRGSSDT SNSMSRLCHQ GGQAFEKVDC TSELSEEEFS ACRIREAEKS GHTSPGISYI HSRSESVSSA VSSIEYLPSA STDVSRISSK HDNVSDTSGE
401: VQCDYRISSP CNKSVGNSPN LSARQYHSSK TMSEMAVNGL HNHARQLSLP TKSASDDLTT SSHVEKLIRD LESQSTEVQM AAAAEFRFLA KHNMENRAII
501: GRCGAIAPLI SLLNSDVKPT QEHAVTALLN LSINEDIKAM IAEQGALEPL IHVLRTGNAG AKENAAAALF SLSLLEEYRK KIGRSGAVKA LVDLLGLGTI
601: RGKKDAATAL FNLSIFHENK ARIIQVGAVK HLIRLLDPSN VMVDKAVALL ANLSTISEGC LAIAREEGIP SLVEIVETGS QRGKENAASI LLQLCLNSPK
701: YCRLVLQEGA VPPLVALSQS GSPRAKEKAQ QLLSHFRSQR EGATGRGKS

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.