Factsheet for Solyc04g050780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011486	Potato	cytosol	66.36	80.11
Solyc04g050770.1.1	Tomato	cytosol	78.89	76.75
KRH68828	Soybean	cytosol	48.72	48.84
VIT_04s0043g00840.t01	Wine grape	cytosol	51.28	48.57
KRG97080	Soybean	cytosol, nucleus	48.72	47.73
Solyc09g056450.2.1	Tomato	cytosol	48.49	46.55
Bra001247.1-P	Field mustard	cytosol	47.56	44.96
CDX74050	Canola	cytosol	47.1	44.52
KRG92593	Soybean	cytosol	45.71	44.47
CDY08002	Canola	cytosol	46.4	43.96
Bra040374.1-P	Field mustard	cytosol	45.94	43.9
AT3G07360.1	Thale cress	cytosol	46.4	43.48
CDY28059	Canola	cytosol	46.17	43.07
CDY71737	Canola	cytosol	46.17	43.07
Bra029642.1-P	Field mustard	cytosol	45.94	42.86
GSMUA_Achr10P...	Banana	cytosol	37.12	42.78
GSMUA_Achr6P06560_001	Banana	cytosol	36.19	41.82
GSMUA_Achr9P01670_001	Banana	cytosol	42.46	39.27
Os02t0488600-01	Rice	cytosol, nucleus	38.52	39.24
EES06804	Sorghum	cytosol	40.6	37.72
TraesCS2A01G276400.1	Wheat	nucleus	39.91	37.39
TraesCS2B01G294100.1	Wheat	nucleus	39.91	37.39
TraesCS2D01G275400.1	Wheat	nucleus	39.68	37.17
Zm00001d016501_P001	Maize	cytosol	39.68	36.77
HORVU2Hr1G067610.6	Barley	cytosol	40.37	36.71
Os04t0348400-01	Rice	cytosol	38.28	35.95
AT5G18320.1	Thale cress	cytosol	35.96	33.84
CDY68352	Canola	cytosol	35.5	33.55
CDY38506	Canola	cytosol	34.57	32.68
AT5G18330.1	Thale cress	cytosol	31.79	30.79
Solyc12g088360.1.1	Tomato	cytosol	19.49	30.55
Bra006451.1-P	Field mustard	cytosol	30.63	28.27
AT5G18340.1	Thale cress	nucleus	29.7	28.07
CDX70810	Canola	cytosol	30.63	27.97
Solyc04g077850.2.1	Tomato	cytosol	21.81	26.4
CDY51235	Canola	extracellular, golgi	30.39	25.24
Solyc12g094610.1.1	Tomato	cytosol	28.77	23.09
Solyc11g008390.1.1	Tomato	cytosol	31.32	21.63
Solyc11g066040.1.1	Tomato	cytosol	32.71	21.27
Solyc06g051090.1.1	Tomato	cytosol	27.61	21.17
Solyc06g076040.2.1	Tomato	cytosol	32.25	21.03
Solyc04g014810.2.1	Tomato	plastid	21.81	20.84
Solyc11g012440.1.1	Tomato	cytosol, plastid	22.04	20.7
Solyc04g007640.2.1	Tomato	cytosol	30.86	20.56
Solyc05g008230.2.1	Tomato	cytosol	30.39	20.15
Solyc04g082440.2.1	Tomato	cytosol	29.93	19.88
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	29.0	17.27
Solyc09g025270.2.1	Tomato	cytosol	29.23	16.82
Solyc03g114160.1.1	Tomato	cytosol	25.99	16.42
Solyc09g018230.1.1	Tomato	plastid	25.29	15.84
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	25.06	15.77
Solyc12g100000.1.1	Tomato	cytosol, plastid	29.47	15.51
Solyc01g014230.2.1	Tomato	cytosol	29.0	15.41
Bra002153.1-P	Field mustard	cytosol	34.11	10.76
CDX70805	Canola	cytosol	31.55	8.83
CDY51234	Canola	cytosol	32.02	8.33
Bra006452.1-P	Field mustard	cytosol	32.02	8.31

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4BS42	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF75	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g050780.1	EnsemblPlants:Solyc04g050780.1.1	UniParc:UPI0002766DBF	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BS42]

Coordinates

chr4:+:48259054..48260410

Molecular Weight (calculated)

48371.1 Da

IEP (calculated)

7.562

GRAVY (calculated)

-0.108

Length

431 amino acids

Sequence
(BLAST)

001: MAEERRRLAA SVDELKRELQ RRVNCIVENA DYTIEDIDEA IHCLSALEDL KLRAAPPPEY LCPISHQLMK DPVVLASGQT YDRPYIENWL NKGNRTCPET
101: KELLPNSHLI PNLVMRKLIS LWCKDHGIEH GVIPESDRHH FNSLLQILSS NHDLPEKIKA AKLVRILTKS FPPLRAFFQW DTVALTKLLH PLMSGNVNDH
201: PKLQEELITT IMNISLHDPN KKIIATNPLV IPLLVQSLKF GTLETRSNSA AALCTLSSLD SNKSIITKAG ALEPLVKLLD EGPLLAMKDA AAAIVNLAVV
301: KENRSIAVFE GAVKVIMKKI TDRILVDELL VLLSMLSTYD KPIEQMVKLD AVSCLLSIIK EDTSDKSKEH CIAILHTLCY NDRTRLQEIW RDESVNGIIA
401: NLALNGTTRA KRKAKEIVER IDKYFSAAQT S

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.