Factsheet for Solyc04g082440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025648	Potato	cytosol	97.38	97.38
Solyc12g094610.1.1	Tomato	cytosol	59.63	72.07
KRH40395	Soybean	cytosol	60.25	61.57
KRH00831	Soybean	cytosol	60.09	61.42
GSMUA_Achr4P05030_001	Banana	cytosol	47.46	58.78
GSMUA_Achr4P04900_001	Banana	cytosol	47.0	57.77
KRH33490	Soybean	cytosol	46.07	56.95
CDX95193	Canola	cytosol	56.86	56.34
CDY68037	Canola	cytosol	56.55	56.03
VIT_18s0001g14180.t01	Wine grape	cytosol	59.01	55.99
Bra027977.1-P	Field mustard	cytosol	56.24	55.98
AT5G42340.1	Thale cress	cytosol	56.39	55.45
Os08t0481200-01	Rice	cytosol	53.62	54.21
TraesCS7A01G549700.1	Wheat	cytosol	53.16	53.41
KXG20946	Sorghum	cytosol	52.7	53.19
Zm00001d014845_P001	Maize	cytosol	52.39	53.04
EES15482	Sorghum	cytosol	52.23	52.72
TraesCS7D01G536300.1	Wheat	cytosol	52.39	52.71
HORVU7Hr1G121810.1	Barley	cytosol	51.77	52.42
TraesCS7D01G289800.1	Wheat	cytosol	51.77	52.17
Zm00001d031263_P001	Maize	cytosol	51.62	51.94
HORVU7Hr1G061800.2	Barley	cytosol	51.46	51.86
TraesCS7B01G186600.1	Wheat	cytosol	51.31	51.71
TraesCS7A01G293900.1	Wheat	cytosol	51.31	51.71
TraesCS7B01G473200.1	Wheat	cytosol	52.7	50.74
Os06t0726900-00	Rice	cytosol	27.12	46.32
Solyc11g008390.1.1	Tomato	cytosol	40.22	41.83
Solyc11g066040.1.1	Tomato	cytosol	41.76	40.87
Solyc06g076040.2.1	Tomato	cytosol	41.6	40.85
Solyc12g088360.1.1	Tomato	cytosol	15.56	36.73
Solyc04g007640.2.1	Tomato	cytosol	35.59	35.7
Solyc05g008230.2.1	Tomato	cytosol	35.44	35.38
Solyc09g056450.2.1	Tomato	cytosol	21.57	31.18
Solyc06g051090.1.1	Tomato	cytosol	26.81	30.96
Solyc04g077850.2.1	Tomato	cytosol	16.64	30.34
Solyc04g050780.1.1	Tomato	cytosol	19.88	29.93
Solyc04g050770.1.1	Tomato	cytosol	19.41	28.44
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	30.2	27.07
Solyc09g025270.2.1	Tomato	cytosol	30.05	26.03
Solyc11g012440.1.1	Tomato	cytosol, plastid	18.34	25.93
Solyc04g014810.2.1	Tomato	plastid	17.72	25.5
Solyc03g114160.1.1	Tomato	cytosol	26.35	25.07
Solyc09g018230.1.1	Tomato	plastid	26.19	24.71
Solyc01g014230.2.1	Tomato	cytosol	30.35	24.29
Solyc12g100000.1.1	Tomato	cytosol, plastid	30.2	23.93
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	24.65	23.36

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	UniProt:K4BVX1	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g082440.2	EnsemblPlants:Solyc04g082440.2.1	UniParc:UPI0002766686
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BVX1]

Coordinates

chr4:+:66090632..66093431

Molecular Weight (calculated)

72964.5 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.270

Length

649 amino acids

Sequence
(BLAST)

001: MVSAGEIEFE QGFKMDEEND QSNRITTPID NKDLVYELMG IIHIISSYAE FRRTQRKESR NLVRRMKLLL PLLEEIRDFQ GKIPESGVHC LVKMKKAFHS
101: AKKLLKTCHC GSKLYLALES EAVIRRFHSV YEKLSQTLDG MPYEELGISD EEKEQVELMI IQFKRSKKRI DTQDMELAMD LMVSLSSEND RNADSASIER
201: LAKKLELHTV EDLKAEMISV NEVIKERRSH NAENTQRIVD LLDKLKKLAG MEETGPCDEP VMPKALEKST SIAIPNEFLC PITLQIMADP VIISTGQTYE
301: RDSIQQWLDS NHHTCPKTGE TLTHLSLAPN FALRNLIEEW CSKNNFQLPA KEAPTNPESP CAGSDEKLLS LIKDLSFSHL EVQRKAVTKI RMLSKENPEK
401: RTLIANYGGI PPLVLLLSYP DSKIQEHAVT ALLNLSIDES NKKLISRENA IPEIIEILQN GSVGAKENSA AALFSLSMLD ENKVAIGSLN GIPPLIDLLK
501: NGTIRGRKDA ITALFNLCFN HANKSIAIQA GIVAPLLQLL EEKHLDMVDE TLSILLILAT HPEGRQVIGK LSFIETLVNL MKDGTPKNKE CSVAVLFELS
601: TYNSNLMLAA LQYGVYEYLV EISKEGTDRG QRKAKSILQL MTKTEQIPY

Best Arabidopsis Sequence Match ( AT5G42340.1 )
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Arabidopsis Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.